Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C11
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2...    29   1.1  
SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni...    28   1.4  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   4.4  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   4.4  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   5.8  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   7.7  

>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
           Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 433 IARHPPCTIYRLR*-PLHNTNKVKN*TTQLRK 525
           +A+HPP   Y  R  PL++ NKVK+   +LRK
Sbjct: 31  VAKHPPTFQYARRIVPLYDPNKVKSRGKRLRK 62


>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
           Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 119

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 398 IALVSSLIFKLECGNCAADCAVQWT 324
           ++ + SLIF  ECGN       QWT
Sbjct: 1   MSAIGSLIFCSECGNLLESTTAQWT 25


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 384  RYKCNLDFXSHLCMFQNSATSSVYYL 461
            +YK NL F   LC+  N   + VY+L
Sbjct: 1278 QYKENLGFFDSLCIGDNECITRVYFL 1303


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 727  TXACVRACVEEVLRGRRISCRTLNTLSLI 641
            T +C+ AC   VLR + ++  +LN L ++
Sbjct: 924  TFSCLLACCNSVLRTQNLTSESLNKLHIL 952


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 341 CAVQWTGGRWCLIAPR 294
           C++ W G R C + PR
Sbjct: 724 CSIYWAGSRLCFVQPR 739


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 158 FKSDLYPSNCPALNEIYYLEKKL-Q*IPKTN 247
           +K DL+P+N  A   I +  + L + IPKT+
Sbjct: 688 YKQDLFPANSEAARRISFFAQSLAESIPKTS 718


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,814
Number of Sequences: 5004
Number of extensions: 53811
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)