Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C11
         (844 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0153 + 21299150-21299593,21299733-21299873,21299971-213000...    30   2.0  
05_04_0160 - 18624952-18625106,18625411-18625535,18625954-186260...    29   6.1  
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329...    29   6.1  

>03_05_0153 +
           21299150-21299593,21299733-21299873,21299971-21300084,
           21300181-21300354,21300486-21300494
          Length = 293

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 304 MRHHRPPVHCTAQSAAQLPHSSLKIRLDTSA 396
           +R H PP  C+A S  +L  SS ++RL  +A
Sbjct: 19  LRGHHPPPSCSAPSLLRLTRSSRRLRLRAAA 49


>05_04_0160 -
           18624952-18625106,18625411-18625535,18625954-18626087,
           18626221-18626298,18626456-18626561,18627739-18627836
          Length = 231

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 672 DILRPLNT-SSTHARTHAXVHAPCVTSPFRYNRVYVYXHGG 791
           D +RPL+  +ST+ R    +HAP     F  +R ++  H G
Sbjct: 125 DAIRPLSFGNSTYRRLFRVIHAPVFLRSFASDRSHMKDHAG 165


>02_01_0459 +
           3298780-3298788,3298900-3299037,3299174-3299207,
           3299528-3299531,3299814-3299949,3300034-3300090,
           3301689-3301786,3301876-3301947,3302056-3302228,
           3302552-3302698,3303113-3303336,3305300-3305306,
           3305634-3305800,3306033-3306068,3306787-3307004,
           3307115-3307172,3307761-3307842,3308045-3308207,
           3308594-3308598,3308700-3308885,3308969-3309548,
           3309642-3309774,3309880-3309948,3310184-3310395,
           3310654-3310891,3311228-3311386,3311501-3311926,
           3312010-3312447,3312593-3312712,3312784-3313266,
           3313471-3314009,3314178-3314667,3314836-3314904,
           3315735-3315839,3315940-3316158,3316254-3316508,
           3316602-3316651,3317175-3317284,3317372-3317454,
           3317560-3317772,3317870-3318040
          Length = 2391

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 642 MRDKVFSVRHDILRPLNTSSTHARTHAXVHAPCVTSPF 755
           M D ++ VRH  +  L    TH    A V+ P + SPF
Sbjct: 668 MFDPIWEVRHGTIMALREILTHQGACAGVYFPDLNSPF 705


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,290,649
Number of Sequences: 37544
Number of extensions: 340110
Number of successful extensions: 608
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)