Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C09
         (1001 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    73   5e-14
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    63   7e-11
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    26   7.2  
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    26   9.6  

>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 73.3 bits (172), Expect = 5e-14
 Identities = 43/106 (40%), Positives = 57/106 (53%)
 Frame = +2

Query: 11  RVTGSSSQFAKILEMAARIIRKIVPATRAGAAQYSTGVRKVTLIPGHGIGPXITVAVQKI 190
           R  GS   F++    + R       A      + + G   VT+I G GIGP I  +V++I
Sbjct: 8   RTAGSLRTFSRSACYSFRFSSTKAAAGTYEGVKNANGNYTVTMIAGDGIGPEIAQSVERI 67

Query: 191 FEAAKVPIEWEEVDVTAVRGPDGKFGIPQKAIDSVNANKIGLKGPL 328
           F+AAKVPIEWE V V  +   +G   IP  A +SV  NK+ LKGPL
Sbjct: 68  FKAAKVPIEWERVKVYPIL-KNGTTTIPDDAKESVRKNKVALKGPL 112



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 22/48 (45%), Positives = 28/48 (58%)
 Frame = +3

Query: 306 KLA*RVPCMTPXGKGYRSLNLALXKXSDLYANVXPCXSXXXDPXPXYD 449
           K+A + P  TP GKG+ S+NL L +   L+ANV PC S      P YD
Sbjct: 105 KVALKGPLATPIGKGHVSMNLTLRRTFGLFANVRPCVSITGYKTP-YD 151


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 62.9 bits (146), Expect = 7e-11
 Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
 Frame = +2

Query: 119 GVRKVTLIPGHGIGPXITVAVQKIFEAAKVPIEWEEVDVTAVRGPDGKFG-IPQKAIDSV 295
           G   VTLIPG GIG   + AV +IF+ A VPIE+EE+DVT +   +   G    +AI S+
Sbjct: 19  GKYTVTLIPGDGIGRETSNAVTEIFKTANVPIEFEEIDVTGMEKNNKSSGDALHEAIQSL 78

Query: 296 NANKIGLKGPL 328
             NK+GLKG L
Sbjct: 79  KRNKVGLKGIL 89


>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = +2

Query: 137 LIPGHGIGPXITVAVQKIFE--AAKVPIEWEEVDVTAVRGPDGKFG--IPQKAID 289
           LIP  GIG  +  A +++ E   AK  ++++ +D+ A  G   + G  +P++ ++
Sbjct: 11  LIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVE 65


>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 265 EFAIWTPNSCYIHFLPFDRYFSCFEDFLN 179
           EFA   PN  YI +L F  +    ++ LN
Sbjct: 66  EFAFTLPNDAYIRYLSFSNWEELKKEALN 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,089
Number of Sequences: 5004
Number of extensions: 35318
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 519268360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)