Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C09
         (1001 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-1|CAB02111.2|  358|Caenorhabditis elegans Hypothetical pr...   104   9e-23
Z81046-1|CAB02822.1|  379|Caenorhabditis elegans Hypothetical pr...    49   5e-06
Z46242-1|CAA86325.2|  396|Caenorhabditis elegans Hypothetical pr...    45   1e-04
AC006610-5|AAK85453.1|  373|Caenorhabditis elegans Hypothetical ...    41   0.001

>Z79755-1|CAB02111.2|  358|Caenorhabditis elegans Hypothetical
           protein F43G9.1 protein.
          Length = 358

 Score =  104 bits (250), Expect = 9e-23
 Identities = 52/93 (55%), Positives = 68/93 (73%), Gaps = 1/93 (1%)
 Frame = +2

Query: 53  MAARIIRKIVPATRAGAAQYSTG-VRKVTLIPGHGIGPXITVAVQKIFEAAKVPIEWEEV 229
           M  + I+K   +T   + +YS+G VR+VTLIPG GIGP I+ +VQKIFEAA  PI W+ V
Sbjct: 1   MLGKCIKK-ASSTVGQSIRYSSGDVRRVTLIPGDGIGPEISASVQKIFEAADAPIAWDPV 59

Query: 230 DVTAVRGPDGKFGIPQKAIDSVNANKIGLKGPL 328
           DVT V+G DG F IP + I+ ++ANK+GLKGPL
Sbjct: 60  DVTPVKGRDGVFRIPSRCIELMHANKVGLKGPL 92



 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 22/38 (57%), Positives = 26/38 (68%)
 Frame = +3

Query: 306 KLA*RVPCMTPXGKGYRSLNLALXKXSDLYANVXPCXS 419
           K+  + P  TP GKG+RSLNLA+ K   LYANV PC S
Sbjct: 85  KVGLKGPLETPIGKGHRSLNLAVRKEFSLYANVRPCRS 122


>Z81046-1|CAB02822.1|  379|Caenorhabditis elegans Hypothetical
           protein C37E2.1 protein.
          Length = 379

 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
 Frame = +2

Query: 128 KVTLIPGHGIGPXITVAVQKIFEAAKVPIEWEEVDVTAVRGPDGKFGIPQKAIDSVNA-N 304
           KVT+IPG G+GP +   VQ I +   +PIE+EE+ ++ V     +    + A++S+   N
Sbjct: 44  KVTIIPGDGVGPELIYTVQDIVKQTGIPIEFEEIFLSEVHYT--RSSSIENAVESIGRNN 101

Query: 305 KIGLKGPLHDS 337
            + LKG + +S
Sbjct: 102 NVALKGAIEES 112


>Z46242-1|CAA86325.2|  396|Caenorhabditis elegans Hypothetical
           protein F35G12.2 protein.
          Length = 396

 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 24/73 (32%), Positives = 41/73 (56%)
 Frame = +2

Query: 104 AQYSTGVRKVTLIPGHGIGPXITVAVQKIFEAAKVPIEWEEVDVTAVRGPDGKFGIPQKA 283
           A+Y  G   VT++PG GIGP +   V++I  A + P+++E V++T+            +A
Sbjct: 46  ARYG-GRHNVTVLPGDGIGPEMLHHVERILSAVQAPVDFEVVNLTSKEDASEDLA---EA 101

Query: 284 IDSVNANKIGLKG 322
           I ++  N + LKG
Sbjct: 102 ITAIKRNGVALKG 114


>AC006610-5|AAK85453.1|  373|Caenorhabditis elegans Hypothetical
           protein C30F12.7 protein.
          Length = 373

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 26/81 (32%), Positives = 39/81 (48%)
 Frame = +2

Query: 80  VPATRAGAAQYSTGVRKVTLIPGHGIGPXITVAVQKIFEAAKVPIEWEEVDVTAVRGPDG 259
           +P  R   A+Y  G   V  +PG GIGP +   ++ IF     P+ +EEV V++    DG
Sbjct: 22  IPGHRLPLAKYG-GRHTVCALPGDGIGPEMIAHIRNIFSFCHAPVNFEEVQVSSSL-LDG 79

Query: 260 KFGIPQKAIDSVNANKIGLKG 322
                  AI+    N + +KG
Sbjct: 80  DMDAAMLAIE---RNGVAIKG 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,564,645
Number of Sequences: 27780
Number of extensions: 229659
Number of successful extensions: 697
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2626021738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)