Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C07
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    32   0.091
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    27   2.6  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   6.0  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   6.0  

>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 32.3 bits (70), Expect = 0.091
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 363 TMT*GSNKMALRLKK-DIKKASYYVWFLGAQESRGLRGEEFALPAITLLEERARELEPFX 539
           +MT    K+  RLK  D+K  S   W   A E   ++GEEF    IT  +E + E++PF 
Sbjct: 225 SMTSILEKIFERLKYIDVKTDSEDFW--DASEEHSIKGEEFHYKKITEGDEISNEIDPFG 282

Query: 540 V 542
           +
Sbjct: 283 I 283


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +1

Query: 133  INTTLIGLAFEYKLLESFGIDKSL 204
            INTT +G    Y+LLESFG +K L
Sbjct: 1098 INTT-VGWQLFYRLLESFGHEKKL 1120


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 531 VPTPLLSPRVT*SPVAQTPRPADREIPEP 445
           V +P + P+VT +P    P PA +  P P
Sbjct: 718 VNSPAIKPQVTPAPPTPAPTPAVKHHPPP 746


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 2   TGVNRRTAALEASLNLKHK*TPL 70
           T +NR   AL  S+NLKH   P+
Sbjct: 830 TSLNREKPALHGSINLKHSTRPV 852


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,472
Number of Sequences: 5004
Number of extensions: 44963
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)