Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C07
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489...    30   2.1  
03_03_0059 + 14149796-14150350,14152303-14152433,14153479-141535...    29   4.8  

>01_01_0645 +
           4890647-4890682,4891684-4891929,4892021-4892317,
           4892407-4892574,4892674-4892841,4892924-4893004,
           4893105-4893171,4893657-4893751,4894027-4894099,
           4894177-4894247,4894325-4894374,4895263-4895375,
           4895461-4895513
          Length = 505

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = +3

Query: 426 YYVWFLGAQESRGLRGEEFALPAITLLEERARELEPFXVTLQVSHKGLKIIQNVTAKGKQ 605
           ++ W  GA+ S  L   +F LP +T+       +EP    +     G+KI    T  G  
Sbjct: 40  FWTWLTGAR-SNALPPPDFTLPGVTIPPPLPDLVEPGKTKITTLANGVKIASE-TTPGPS 97

Query: 606 QTIXHFIPHGSITSA 650
            ++  ++  GS+  A
Sbjct: 98  CSVGVYVNCGSVHEA 112


>03_03_0059 +
           14149796-14150350,14152303-14152433,14153479-14153520,
           14153632-14153740,14154262-14154340,14154437-14154733,
           14154820-14154932,14155375-14155482,14155554-14155616,
           14155698-14155865,14156283-14156348
          Length = 576

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 452 LSPEEPNVIRRFLDILFKSQRHFVGALCHCWIR 354
           LS E  + +RR L+  ++ +     ALCH WIR
Sbjct: 378 LSAEAKDFVRRLLNKDYRKRMTAAQALCHPWIR 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,152,081
Number of Sequences: 37544
Number of extensions: 277509
Number of successful extensions: 556
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)