Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C07
         (864 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family...    33   0.19 
At3g51150.1 68416.m05601 kinesin motor family protein contains P...    29   5.3  

>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
           protein 
          Length = 477

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
 Frame = +3

Query: 384 KMALRLKKDIKKASYYVWFLGAQESRG--LRGEEFALPAITLLEERARELEPFXVTLQVS 557
           ++A +LKK I  ASY   ++    SRG  +        ++ L    +  L+    T+  S
Sbjct: 229 ELASQLKKGINLASYENLYITLSNSRGSTVAPPTIVHSSVLLTFGSSSRLKQLAQTITSS 288

Query: 558 H-KGLKIIQNVTAKGKQQTIXHFIPHGSITSA 650
           H K L +   V  K KQ  +   +PH   TS+
Sbjct: 289 HSKNLGLNHTVFGKVKQVRLSSILPHSPATSS 320


>At3g51150.1 68416.m05601 kinesin motor family protein contains Pfam
           domain, PF00225: Kinesin motor domain
          Length = 1025

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 601 FPLAVTFCIIFRPLCETCNVTXKGSNSLALS 509
           +P A TF  +F P C T  V  +G+  +ALS
Sbjct: 62  YPTAYTFDRVFGPECSTREVYDQGAKEVALS 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,342,995
Number of Sequences: 28952
Number of extensions: 235180
Number of successful extensions: 589
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)