Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C06
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0140 - 23073032-23073130,23073270-23073338,23073448-230735...    30   2.7  
10_08_0818 + 20801061-20801298,20801409-20801509,20801600-208018...    29   3.6  
02_05_0015 - 24992253-24993993,24995331-24995695                       29   4.7  
11_02_0052 + 7788655-7789850,7789921-7790011                           28   8.2  
07_01_1139 - 10684647-10685837,10685877-10686251,10686351-106865...    28   8.2  
04_04_0795 - 28111155-28111649,28111747-28112405,28112499-281126...    28   8.2  

>04_04_0140 -
           23073032-23073130,23073270-23073338,23073448-23073539,
           23073637-23074550,23074646-23074779,23075003-23075058,
           23077556-23077646
          Length = 484

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 215 FWYSLVGCNVFILFHLPSIXSRDGFSVAPTSLIV-YYTLKTSFSLRESSP 69
           +W  + G + F+L  LPS+ S    S+A  ++ V Y T+  +  L   +P
Sbjct: 191 YWICIFGASQFLLSQLPSLDSITAVSLAAAAMSVGYSTISWAACLARGTP 240


>10_08_0818 +
           20801061-20801298,20801409-20801509,20801600-20801817,
           20802461-20802824
          Length = 306

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +1

Query: 514 PGCACSPGL---LQSLYAHPSAARPNPGH 591
           PG AC P L   L  L  HPS A+P+PG+
Sbjct: 10  PGSACIPLLILLLLLLLLHPSEAQPSPGY 38


>02_05_0015 - 24992253-24993993,24995331-24995695
          Length = 701

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 351 AKYVVGDHRNGDAKIELDANKRQFTGMTREEVLKYADDPFWVN 479
           AK V+  +  GD      + K   T + RE V  YADDP   N
Sbjct: 531 AKKVLTMNPTGDLSSARFSEKNLLTAIDREAVFSYADDPCSAN 573


>11_02_0052 + 7788655-7789850,7789921-7790011
          Length = 428

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 767 KQNFEFVQCVTFV-EHFVSRHLDEH 696
           K + ++  CV F  EHFV+R++D H
Sbjct: 340 KNDVDYYSCVCFGNEHFVARYIDRH 364


>07_01_1139 -
           10684647-10685837,10685877-10686251,10686351-10686534,
           10686699-10686895
          Length = 648

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 175 KRMNTLQPTRLYQNLIQNSGRPKRTSANRRRRYLPTAPKRNY*RRKTR 318
           ++  T+   R ++  +++S RP+  S   R   LP   +R Y RR  R
Sbjct: 593 EKETTMPRNRYWKKPVKSSNRPRGQSRQLRGSRLPHQSQRRYGRRSPR 640


>04_04_0795 -
           28111155-28111649,28111747-28112405,28112499-28112635,
           28112747-28113093
          Length = 545

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -3

Query: 251 EVRFGRPEFCIRFWYSLVGCNVFILFHLPSIXSRDGFS-VAPTSLIVYYTLKTSFSLRES 75
           EV   RP   +  WY +  C   +L  LP++ S  G S V  T+ + Y T+    S+ + 
Sbjct: 203 EVCLARPLTTVE-WYLVFVCVAALLSQLPNLNSIAGVSLVGATAAVAYCTMIWVVSVAKG 261

Query: 74  SPFTINHD 51
               +++D
Sbjct: 262 RVAGVSYD 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,232,083
Number of Sequences: 37544
Number of extensions: 484975
Number of successful extensions: 1422
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1422
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)