Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C05
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.89 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.89 
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   4.8  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    26   8.3  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    26   8.3  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 200 SGCGRCRVWSMFVRYVRFSE 259
           +GCG+  VW  +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 384 ARKIRGRPENAGPDPVRNVRRFSRV 310
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 215 TGRIRFPSKPDTPRSSEPILIPKLXDPICRLPLPTL 108
           T  I  PS P+ P SS P+L P   +    +PL  L
Sbjct: 114 TVSIASPSTPELPPSSSPLLPPNGSESSSPIPLSLL 149


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 28  MYVEMSRRF-VPISAAGLQGEEPLVR*NNV 114
           M++++++ F +PI    LQ  E L R NNV
Sbjct: 337 MWIDIAQEFEIPIRCIHLQSSEELARHNNV 366


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = -2

Query: 245 HNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLXDPICRLPLPTLFYRTRGSSPWRP 72
           H+A T+  P  G  R+         +E + IP     I   P+PT+      S+P  P
Sbjct: 514 HSAFTNVLPLDGLPRYEEATRPSSPTESVEIPSNTTTIAPSPVPTIIAPALPSTPAPP 571


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,091
Number of Sequences: 5004
Number of extensions: 50327
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)