Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_C04
(833 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70755-3|CAA94782.1| 475|Caenorhabditis elegans Hypothetical pr... 175 4e-44
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho... 94 1e-19
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi... 94 1e-19
U10402-9|AAA19065.1| 892|Caenorhabditis elegans Gro-1 operon ge... 30 2.3
AY052769-1|AAL14108.1| 885|Caenorhabditis elegans GOP-1 protein. 30 2.3
AF039718-6|AAB96743.1| 249|Caenorhabditis elegans Hypothetical ... 30 2.3
AF038611-7|AAB92040.1| 466|Caenorhabditis elegans Hypothetical ... 28 7.2
Z68014-2|CAA92024.1| 565|Caenorhabditis elegans Hypothetical pr... 28 9.5
AF357877-1|AAK27715.1| 835|Caenorhabditis elegans receptor-medi... 28 9.5
AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor med... 28 9.5
AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor med... 28 9.5
>Z70755-3|CAA94782.1| 475|Caenorhabditis elegans Hypothetical
protein K06A4.3 protein.
Length = 475
Score = 175 bits (425), Expect = 4e-44
Identities = 85/214 (39%), Positives = 124/214 (57%), Gaps = 1/214 (0%)
Frame = +3
Query: 192 PAFANVGRTAGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDNRNNLSWDIHYWI 371
PA A +G+ G+ +WRI F PV + D G FY GD+YI L D WD+H+W+
Sbjct: 8 PALAEIGKKNGLLVWRINKFVLEPVPEVDHGVFYIGDAYIALYQKYDG----CWDVHFWL 63
Query: 372 GRESTQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLNYLEGGNPSGF 551
G+ ++ DE G AAI TV +DD GG QHRE +ES LFLSYF + Y+ GG SG+
Sbjct: 64 GKNASTDEIGVAAIKTVEIDDSLGGIPTQHREIQNYESPLFLSYFPDGIRYVSGGYESGY 123
Query: 552 NHVVTNAGAQK-RMFQVKGKRDVRVRQVDPQIASMNKGDVFVLDLDNDIYVFVGXKAKNV 728
HV K +F KGKR+VR +V+ ++ S+N GDVF+LDL D+YV++ ++ +
Sbjct: 124 RHVDDQFKNWKPHLFHCKGKRNVRCTEVECEVNSLNLGDVFILDLGKDLYVWMPPESGRL 183
Query: 729 EKLXAISFANQVRDXDXHGXGXIXXVDXXSXDXD 830
E++ ++ A + D + G + +D D D
Sbjct: 184 ERIKGMARAKNIADHERMGIPKVHILDDVEWDND 217
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 663 DVFVLDLDNDIYVFVGXKAKNVEKLXAISFANQVRDXD 776
DV +LD N IYV+VG A EK A++ A + D
Sbjct: 388 DVMILDALNSIYVWVGANANANEKKEALNTAKLYLEKD 425
>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I homolog
protein.
Length = 1257
Score = 94.3 bits (224), Expect = 1e-19
Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 3/201 (1%)
Frame = +3
Query: 204 NVGRTAGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDNRNNLSWDIHYWIGRES 383
+VG G+ +W I+NF P + + G+FY D+Y++L+TT + L I YW+G +
Sbjct: 503 DVGSDEGMWVWEIENFYPSIMDEAFHGQFYDADAYLVLKTTREASGQLRHAIFYWLGEHA 562
Query: 384 TQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLNYLEGGNP-SGFNHV 560
+ D+ +A+ VGL + RE M E+ FL+ F + Y+EGG SGF +
Sbjct: 563 SLDKGMCSAVHAVGLRNHLNATCRTQREEMNDETEEFLTLFGEEIVYIEGGRTISGF-YT 621
Query: 561 VTNAGAQKRMFQ--VKGKRDVRVRQVDPQIASMNKGDVFVLDLDNDIYVFVGXKAKNVEK 734
R+++ V G V + V + S++ F+LD I+++ G K++
Sbjct: 622 TEKPAHLTRLYRAGVNGTA-VEMEPVPLSVESLDPRFCFLLDAGETIWIWSGYKSRITVS 680
Query: 735 LXAISFANQVRDXDXHGXGXI 797
A FA ++ D G I
Sbjct: 681 NKARLFAERLNKRDRKGKSEI 701
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = +3
Query: 654 NKGDVFVLDLDNDIYVFVGXKAKNVEKL 737
+KG VFVLD ++DI++++G KA + K+
Sbjct: 772 SKG-VFVLDSNSDIFLWIGKKANRLLKM 798
>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
flightless) homologprotein 1 protein.
Length = 1257
Score = 94.3 bits (224), Expect = 1e-19
Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 3/201 (1%)
Frame = +3
Query: 204 NVGRTAGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDNRNNLSWDIHYWIGRES 383
+VG G+ +W I+NF P + + G+FY D+Y++L+TT + L I YW+G +
Sbjct: 503 DVGSDEGMWVWEIENFYPSIMDEAFHGQFYDADAYLVLKTTREASGQLRHAIFYWLGEHA 562
Query: 384 TQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLNYLEGGNP-SGFNHV 560
+ D+ +A+ VGL + RE M E+ FL+ F + Y+EGG SGF +
Sbjct: 563 SLDKGMCSAVHAVGLRNHLNATCRTQREEMNDETEEFLTLFGEEIVYIEGGRTISGF-YT 621
Query: 561 VTNAGAQKRMFQ--VKGKRDVRVRQVDPQIASMNKGDVFVLDLDNDIYVFVGXKAKNVEK 734
R+++ V G V + V + S++ F+LD I+++ G K++
Sbjct: 622 TEKPAHLTRLYRAGVNGTA-VEMEPVPLSVESLDPRFCFLLDAGETIWIWSGYKSRITVS 680
Query: 735 LXAISFANQVRDXDXHGXGXI 797
A FA ++ D G I
Sbjct: 681 NKARLFAERLNKRDRKGKSEI 701
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = +3
Query: 654 NKGDVFVLDLDNDIYVFVGXKAKNVEKL 737
+KG VFVLD ++DI++++G KA + K+
Sbjct: 772 SKG-VFVLDSNSDIFLWIGKKANRLLKM 798
>U10402-9|AAA19065.1| 892|Caenorhabditis elegans Gro-1 operon gene
protein 1 protein.
Length = 892
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -2
Query: 217 VLPTLAKAGWTLALSRAFLSDSDVIGPLIS*GLVAVRAQTDPSKTKRRH 71
V P KAGW + L D+ + G ++ V + PS+ K+RH
Sbjct: 726 VEPDSRKAGWAIVRFVGLLQDTTINGDSTDSKVLHVVVEGQPSRIKKRH 774
>AY052769-1|AAL14108.1| 885|Caenorhabditis elegans GOP-1 protein.
Length = 885
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -2
Query: 217 VLPTLAKAGWTLALSRAFLSDSDVIGPLIS*GLVAVRAQTDPSKTKRRH 71
V P KAGW + L D+ + G ++ V + PS+ K+RH
Sbjct: 719 VEPDSRKAGWAIVRFVGLLQDTTINGDSTDSKVLHVVVEGQPSRIKKRH 767
>AF039718-6|AAB96743.1| 249|Caenorhabditis elegans Hypothetical
protein T12F5.1 protein.
Length = 249
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +3
Query: 111 TATKPQEISGPITSLSDKNARDKAKVHPAFANVGRTAGVQIWRIQNFEPIPVAQK 275
T K QE+ GP+ D+ D AK ++ R G QNF+ I + +K
Sbjct: 171 TPEKGQEVEGPVEEFDDETNEDVAKAR-SYNPAARKLGGSSKSDQNFQKINLRKK 224
>AF038611-7|AAB92040.1| 466|Caenorhabditis elegans Hypothetical
protein E04A4.6 protein.
Length = 466
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 207 VGRTAGVQIWRIQNFEPIPVAQKDIGKFYKG 299
VG AG Q +R++ P+P A +G Y G
Sbjct: 259 VGYKAGEQTYRVKGSIPVPFAVPTLGNCYSG 289
>Z68014-2|CAA92024.1| 565|Caenorhabditis elegans Hypothetical
protein W04G3.2 protein.
Length = 565
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 263 GYWFEVLYSPYLHTG-CSADIGKSRVDLSFVTGVFI 159
G W++V+YSP + TG CS K D TG +
Sbjct: 402 GQWYQVIYSPPVSTGPCSMVSYKKLSDNGEATGSIV 437
>AF357877-1|AAK27715.1| 835|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform II protein.
Length = 835
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 163 KTPVTKLRSTRLLPMSAEQPVCKYGEYRTSNQYP 264
+TPV K+R+ + +P++A++P+ + R S P
Sbjct: 222 ETPVPKMRAQQQVPVAADRPIRRLSIARASMMTP 255
>AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform a protein.
Length = 786
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 163 KTPVTKLRSTRLLPMSAEQPVCKYGEYRTSNQYP 264
+TPV K+R+ + +P++A++P+ + R S P
Sbjct: 173 ETPVPKMRAQQQVPVAADRPIRRLSIARASMMTP 206
>AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform b protein.
Length = 835
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 163 KTPVTKLRSTRLLPMSAEQPVCKYGEYRTSNQYP 264
+TPV K+R+ + +P++A++P+ + R S P
Sbjct: 222 ETPVPKMRAQQQVPVAADRPIRRLSIARASMMTP 255
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,614,319
Number of Sequences: 27780
Number of extensions: 378272
Number of successful extensions: 1094
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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