Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_C03
(865 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 256 4e-69
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 145 6e-36
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 144 2e-35
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 120 2e-28
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 79 1e-15
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 78 1e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 70 4e-13
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 50 3e-07
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.21
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 27 3.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 256 bits (626), Expect = 4e-69
Identities = 119/143 (83%), Positives = 124/143 (86%)
Frame = +3
Query: 237 PAIRXVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 416
P +MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVA
Sbjct: 38 PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97
Query: 417 PEEHPVLLTEAPLNPKANREKMTXIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 596
PEEHP LLTEAPLNPK+NREKMT I+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGD
Sbjct: 98 PEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGD 157
Query: 597 GVSHTXPIYXGXXXXXXXLRLGL 665
GV+HT PIY G +RL L
Sbjct: 158 GVTHTVPIYEGYALPHAIMRLDL 180
Score = 84.2 bits (199), Expect = 2e-17
Identities = 36/41 (87%), Positives = 39/41 (95%)
Frame = +2
Query: 128 DEEVAALVVDNGSGMCKAGFAGDDAPRAVLPSIVGRPRHQG 250
+EE+AALV+DNGSGMCKAGFAGDDAPRAV PSIVGRPRH G
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHG 42
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 145 bits (352), Expect = 6e-36
Identities = 67/127 (52%), Positives = 90/127 (70%), Gaps = 1/127 (0%)
Frame = +3
Query: 252 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEH 428
VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEH
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 429 PVLLTEAPLNPKANREKMTXIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 608
P+LLTE PL N+EK+ +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H
Sbjct: 107 PLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTH 166
Query: 609 TXPIYXG 629
+ PIY G
Sbjct: 167 SVPIYDG 173
Score = 50.0 bits (114), Expect = 4e-07
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +2
Query: 146 LVVDNGSGMCKAGFAGDDAPRAVLPSIVGRPRHQ 247
+ +DNGSG KAGFAGDD P+ + P+ VGR +H+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHE 45
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 144 bits (348), Expect = 2e-35
Identities = 61/117 (52%), Positives = 89/117 (76%)
Frame = +3
Query: 273 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 452
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 453 LNPKANREKMTXIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTXPIY 623
+NP ANREKM MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H P+Y
Sbjct: 110 MNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVY 166
Score = 45.6 bits (103), Expect = 9e-06
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = +2
Query: 134 EVAALVVDNGSGMCKAGFAGDDAPRAVLPSIVGRP 238
E A +V+DNG+G K G+A D+ PR PSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 120 bits (290), Expect = 2e-28
Identities = 59/127 (46%), Positives = 78/127 (61%), Gaps = 9/127 (7%)
Frame = +3
Query: 276 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 452
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 453 LNPKANREKMTXIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSH 608
LNP NRE IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 609 TXPIYXG 629
P+ G
Sbjct: 193 IIPVAEG 199
Score = 38.3 bits (85), Expect = 0.001
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = +2
Query: 146 LVVDNGSGMCKAGFAGDDAPRAVLPSIV 229
+++DNG+G K G+AG+DAP V P+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 78.6 bits (185), Expect = 1e-15
Identities = 39/104 (37%), Positives = 55/104 (52%)
Frame = +3
Query: 318 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMF 497
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 498 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTXPIYXG 629
E+ PA Y+A Q + +ASG+ T ++D G S IY G
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDG 166
Score = 41.9 bits (94), Expect = 1e-04
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +2
Query: 131 EEVAALVVDNGSGMCKAGFAGDDAPRAVLPSIVG 232
+EV+A+V+D GS + GF+G+D P+ VLPS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 78.2 bits (184), Expect = 1e-15
Identities = 39/125 (31%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Frame = +3
Query: 264 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 440
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 441 TEAPLNPKANREKMTXIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTX 614
TE NP R MT ++FE +N P++ I + S Y + + ++GIVL+ G+ SH
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVI 180
Query: 615 PIYXG 629
P+ G
Sbjct: 181 PVLNG 185
Score = 33.5 bits (73), Expect = 0.040
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 146 LVVDNGSGMCKAGFAGDDAPRAVLPSIVGRPR 241
LV+DNGS +AG+ G+ P+ V ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 70.1 bits (164), Expect = 4e-13
Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 2/133 (1%)
Frame = +3
Query: 237 PAIRXVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 410
P+ V + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 411 VAPEEHPVLLTEAPLNPKANREKMTXIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 590
V P E+ +++TE NP++ R+++ FE + PA Y+ QAV +A+ ++T +++D
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDI 156
Query: 591 GDGVSHTXPIYXG 629
G + P+ G
Sbjct: 157 GSDNASVTPVVDG 169
Score = 38.3 bits (85), Expect = 0.001
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +2
Query: 131 EEVAALVVDNGSGMCKAGFAGDDAPRAVLPSIVG 232
EE+ +LV+D GS + G+AG+++P +LPS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 50.4 bits (115), Expect = 3e-07
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Frame = +3
Query: 333 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTXIMFE 500
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE T FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 501 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTXPIYXG 629
P +A + ++ LYA G G+V+D G + PI G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDG 214
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.1 bits (67), Expect = 0.21
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = +3
Query: 393 FYNELRVAPEEHPVLLTE--APLNPKANREKMTXIMFETFNTPAM---YVAIQ 536
+Y L E+HP+LLT+ A L P+ + ++ I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 536 SRALAVRVRSYHRYRAGLRRRCLPHRAHLXGIALPXAI 649
S A A R + AGL RRCL ++ G+A P +I
Sbjct: 280 SAAYAARWIAKSLVAAGLARRCLVQLSYAIGVAEPLSI 317
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,380
Number of Sequences: 5004
Number of extensions: 57818
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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