Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C02
         (907 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   2.2  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   2.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   2.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.8  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 262 SQKPKKIL*LGSIVFENTLNFNDTDYKWPNHN 167
           S++PK I  L +    N  N+N+ +Y   N+N
Sbjct: 76  SREPKIISSLSNKTIHNNNNYNNNNYNNYNYN 107


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 498 TRRKVKESGWSQVPRP 545
           TR+K+ E GW  +P P
Sbjct: 133 TRQKLLELGWDVLPHP 148


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 498 TRRKVKESGWSQVPRP 545
           TR+K+ E GW  +P P
Sbjct: 255 TRQKLLELGWDVLPHP 270


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 363 FHIVDYASRSEINSRN 410
           F +V+YASRS+++S N
Sbjct: 322 FALVNYASRSDMHSDN 337


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 363 FHIVDYASRSEINSRN 410
           F +V+YASRS+++S N
Sbjct: 322 FALVNYASRSDMHSDN 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,124
Number of Sequences: 438
Number of extensions: 3232
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)