Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C01
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0356 - 2707820-2708395,2708475-2708705,2709071-2709190,270...    29   5.0  
11_01_0332 + 2483743-2484131,2486062-2486182,2486307-2486426,248...    29   5.0  
02_05_0040 + 25341418-25341810                                         29   5.0  

>12_01_0356 -
           2707820-2708395,2708475-2708705,2709071-2709190,
           2709281-2709401,2711588-2712027
          Length = 495

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 1   VPXGXDFLEHCVISIV-AWRGFFITDKLVDILCLSVIKCQA*QSCSRIQ*SVPP 159
           VP G D   HC+  ++ AW     +  L  I    V++CQ+ + C+R+   +PP
Sbjct: 213 VPEGIDV--HCLAGLIKAWFRELPSGVLDSIPPEQVMQCQSEEDCARVAKCLPP 264


>11_01_0332 +
           2483743-2484131,2486062-2486182,2486307-2486426,
           2486897-2487127,2487205-2487783
          Length = 479

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 1   VPXGXDFLEHCVISIV-AWRGFFITDKLVDILCLSVIKCQA*QSCSRIQ*SVPP 159
           VP G D   HC+  ++ AW     +  L  I    V++CQ+ + C+R+   +PP
Sbjct: 196 VPDGIDI--HCLSGLIKAWFRELPSGVLDSIPPEQVMQCQSEEDCARVAKCLPP 247


>02_05_0040 + 25341418-25341810
          Length = 130

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 400 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 302
           RRAAP   CG S+   S  +RR  AP    S P
Sbjct: 74  RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,409,298
Number of Sequences: 37544
Number of extensions: 249863
Number of successful extensions: 560
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)