Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C01
         (894 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74616-1|CAA98969.1| 1366|Homo sapiens prepro-alpha2(I) collagen...    31   5.6  
Y00724-1|CAA68709.1|  765|Homo sapiens protein ( Human mRNA for ...    31   5.6  
J03464-1|AAB59374.1| 1366|Homo sapiens COL1A2 protein.                 31   5.6  
BC054498-1|AAH54498.1| 1366|Homo sapiens collagen, type I, alpha...    31   5.6  
BC042586-1|AAH42586.1| 1366|Homo sapiens collagen, type I, alpha...    31   5.6  
AF004877-1|AAB93981.1| 1366|Homo sapiens pro-alpha 2(I) collagen...    31   5.6  
AC002528-1|AAB69977.1| 1186|Homo sapiens alpha2(I) collagen prot...    31   5.6  

>Z74616-1|CAA98969.1| 1366|Homo sapiens prepro-alpha2(I) collagen
           protein.
          Length = 1366

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -1

Query: 507 GEKXXXKXLGPLEGXXXSGPPNXXGLEXNGAIVLAVGEQRLPEAAGIPDQK*APVVVGSR 328
           GE       GP+     SGPP   G +    +V AVG       +G+P ++ A  + G +
Sbjct: 595 GESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGK 654


>Y00724-1|CAA68709.1|  765|Homo sapiens protein ( Human mRNA for
           prepro-alpha2(I) collagen (COL1A2). ).
          Length = 765

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -1

Query: 507 GEKXXXKXLGPLEGXXXSGPPNXXGLEXNGAIVLAVGEQRLPEAAGIPDQK*APVVVGSR 328
           GE       GP+     SGPP   G +    +V AVG       +G+P ++ A  + G +
Sbjct: 595 GESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGK 654


>J03464-1|AAB59374.1| 1366|Homo sapiens COL1A2 protein.
          Length = 1366

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -1

Query: 507 GEKXXXKXLGPLEGXXXSGPPNXXGLEXNGAIVLAVGEQRLPEAAGIPDQK*APVVVGSR 328
           GE       GP+     SGPP   G +    +V AVG       +G+P ++ A  + G +
Sbjct: 595 GESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGK 654


>BC054498-1|AAH54498.1| 1366|Homo sapiens collagen, type I, alpha 2
           protein.
          Length = 1366

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -1

Query: 507 GEKXXXKXLGPLEGXXXSGPPNXXGLEXNGAIVLAVGEQRLPEAAGIPDQK*APVVVGSR 328
           GE       GP+     SGPP   G +    +V AVG       +G+P ++ A  + G +
Sbjct: 595 GESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGK 654


>BC042586-1|AAH42586.1| 1366|Homo sapiens collagen, type I, alpha 2
           protein.
          Length = 1366

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -1

Query: 507 GEKXXXKXLGPLEGXXXSGPPNXXGLEXNGAIVLAVGEQRLPEAAGIPDQK*APVVVGSR 328
           GE       GP+     SGPP   G +    +V AVG       +G+P ++ A  + G +
Sbjct: 595 GESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGK 654


>AF004877-1|AAB93981.1| 1366|Homo sapiens pro-alpha 2(I) collagen
           protein.
          Length = 1366

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -1

Query: 507 GEKXXXKXLGPLEGXXXSGPPNXXGLEXNGAIVLAVGEQRLPEAAGIPDQK*APVVVGSR 328
           GE       GP+     SGPP   G +    +V AVG       +G+P ++ A  + G +
Sbjct: 595 GESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGK 654


>AC002528-1|AAB69977.1| 1186|Homo sapiens alpha2(I) collagen
           protein.
          Length = 1186

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -1

Query: 507 GEKXXXKXLGPLEGXXXSGPPNXXGLEXNGAIVLAVGEQRLPEAAGIPDQK*APVVVGSR 328
           GE       GP+     SGPP   G +    +V AVG       +G+P ++ A  + G +
Sbjct: 415 GESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGK 474


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,863,581
Number of Sequences: 237096
Number of extensions: 1214414
Number of successful extensions: 2489
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2489
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)