Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B24
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        29   0.86 
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   3.5  

>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 21/74 (28%), Positives = 37/74 (50%)
 Frame = +3

Query: 552 SSKDDLDEIETDESASGVKLETDFEQSIDEIANKKVQANGVQPPPRTAIRNTSSVPGEIL 731
           S+   LD++E     + + +E DFE    E+A K ++A   +    T +R  S +  E+ 
Sbjct: 283 SAASTLDDLEPQYEMTTITIEGDFEGV--ELAQKDIEAIINERTSNTTVR-ISHISTELY 339

Query: 732 NILMGIYPQKVNVK 773
           ++L G  P   N+K
Sbjct: 340 SLLRG--PDGKNIK 351


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 689 NRHKKHKQRSRRDTKHLNGYLPPES 763
           N H  H Q  RR + HLN   PPE+
Sbjct: 139 NAHAPHSQNRRRRSNHLNN--PPEA 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,335,729
Number of Sequences: 5004
Number of extensions: 68810
Number of successful extensions: 164
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)