Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B24
         (871 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U73778-1|AAC51244.1| 3063|Homo sapiens collagen type XII alpha-1...    33   1.8  
AL354664-1|CAH71310.1| 3063|Homo sapiens collagen type XII alpha...    33   1.8  
AL096771-3|CAI19908.1| 3063|Homo sapiens collagen type XII alpha...    33   1.8  
AL096771-1|CAM28080.1|  637|Homo sapiens collagen type XII alpha...    33   1.8  
AL080250-2|CAI19898.1| 3063|Homo sapiens collagen type XII alpha...    33   1.8  
AK127608-1|BAC87055.1|  603|Homo sapiens protein ( Homo sapiens ...    32   3.1  
BC032565-1|AAH32565.1|  392|Homo sapiens LAG1 homolog, ceramide ...    31   7.2  

>U73778-1|AAC51244.1| 3063|Homo sapiens collagen type XII alpha-1
            protein.
          Length = 3063

 Score = 32.7 bits (71), Expect = 1.8
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +3

Query: 558  KDDLDEIETDESASGVKLETDFEQSIDEIANKKVQANGVQPPPRTAIRNTSSVP 719
            ++D+ E+E D S +   L+  F Q++  ++   V   G + PP TA   T  VP
Sbjct: 1604 EEDVKEVEVDRSETSTSLKDLFSQTLYTVSVSAVHDEG-ESPPVTAQETTRPVP 1656


>AL354664-1|CAH71310.1| 3063|Homo sapiens collagen type XII alpha 1
            protein.
          Length = 3063

 Score = 32.7 bits (71), Expect = 1.8
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +3

Query: 558  KDDLDEIETDESASGVKLETDFEQSIDEIANKKVQANGVQPPPRTAIRNTSSVP 719
            ++D+ E+E D S +   L+  F Q++  ++   V   G + PP TA   T  VP
Sbjct: 1604 EEDVKEVEVDRSETSTSLKDLFSQTLYTVSVSAVHDEG-ESPPVTAQETTRPVP 1656


>AL096771-3|CAI19908.1| 3063|Homo sapiens collagen type XII alpha 1
            protein.
          Length = 3063

 Score = 32.7 bits (71), Expect = 1.8
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +3

Query: 558  KDDLDEIETDESASGVKLETDFEQSIDEIANKKVQANGVQPPPRTAIRNTSSVP 719
            ++D+ E+E D S +   L+  F Q++  ++   V   G + PP TA   T  VP
Sbjct: 1604 EEDVKEVEVDRSETSTSLKDLFSQTLYTVSVSAVHDEG-ESPPVTAQETTRPVP 1656


>AL096771-1|CAM28080.1|  637|Homo sapiens collagen type XII alpha 1
           protein.
          Length = 637

 Score = 32.7 bits (71), Expect = 1.8
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +3

Query: 558 KDDLDEIETDESASGVKLETDFEQSIDEIANKKVQANGVQPPPRTAIRNTSSVP 719
           ++D+ E+E D S +   L+  F Q++  ++   V   G + PP TA   T  VP
Sbjct: 345 EEDVKEVEVDRSETSTSLKDLFSQTLYTVSVSAVHDEG-ESPPVTAQETTRPVP 397


>AL080250-2|CAI19898.1| 3063|Homo sapiens collagen type XII alpha 1
            protein.
          Length = 3063

 Score = 32.7 bits (71), Expect = 1.8
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +3

Query: 558  KDDLDEIETDESASGVKLETDFEQSIDEIANKKVQANGVQPPPRTAIRNTSSVP 719
            ++D+ E+E D S +   L+  F Q++  ++   V   G + PP TA   T  VP
Sbjct: 1604 EEDVKEVEVDRSETSTSLKDLFSQTLYTVSVSAVHDEG-ESPPVTAQETTRPVP 1656


>AK127608-1|BAC87055.1|  603|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45706 fis, clone FEBRA2028457, highly  similar
           to Nucleolin. ).
          Length = 603

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +3

Query: 474 MAATSPQGSPSVKICSLXVRVPKLGASSK-DDLDEIETDESASGVKLETDFEQSIDEIAN 650
           M  T  +G  + K+  +  +  K G ++K +D DE E D+S    + + D ++  DEI  
Sbjct: 56  METTPAKGKKAAKVVPVKAKGAKNGKNAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEP 115

Query: 651 KKVQANGVQP 680
             ++A    P
Sbjct: 116 AAMKAAAAAP 125


>BC032565-1|AAH32565.1|  392|Homo sapiens LAG1 homolog, ceramide
           synthase 5 protein.
          Length = 392

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -2

Query: 666 WPEPFYWQFRQCFARNQSQASRQTLIHQFLFRLNRPW 556
           W  P++W  RQC+     Q     L H ++  L   W
Sbjct: 163 WSSPWFWDIRQCWHNYPFQPLSSGLYHYYIMELAFYW 199


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,758,146
Number of Sequences: 237096
Number of extensions: 2644459
Number of successful extensions: 5269
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5263
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11048563978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)