Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_B24
(871 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40801-5|AAO91727.1| 777|Caenorhabditis elegans Hypothetical pr... 32 0.46
U40801-4|AAO91728.1| 873|Caenorhabditis elegans Hypothetical pr... 32 0.46
U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical pr... 32 0.46
Z81065-3|CAH04732.1| 358|Caenorhabditis elegans Hypothetical pr... 32 0.61
Z29443-9|CAA82575.2| 292|Caenorhabditis elegans Hypothetical pr... 31 1.4
AB019521-1|BAC66463.1| 292|Caenorhabditis elegans T-box transcr... 31 1.4
Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical pr... 30 1.9
AL117202-18|CAB57896.3| 765|Caenorhabditis elegans Hypothetical... 30 1.9
AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore... 30 2.5
AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore... 30 2.5
Z83236-10|CAB05780.2| 236|Caenorhabditis elegans Hypothetical p... 29 3.3
AL032660-1|CAA21752.1| 711|Caenorhabditis elegans Hypothetical ... 29 4.3
Z92777-5|CAB07171.1| 409|Caenorhabditis elegans Hypothetical pr... 28 10.0
>U40801-5|AAO91727.1| 777|Caenorhabditis elegans Hypothetical
protein F28E10.1b protein.
Length = 777
Score = 32.3 bits (70), Expect = 0.46
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +3
Query: 486 SPQGSPSVKICSLXVRVPKLGASSKDDL---DEIETDESASGVKLETDFEQSIDEIANKK 656
SP S + + S ++ LG SS + I+T +S SG++ + ID+ AN+
Sbjct: 7 SPLMSMANSVKSKLTKITHLGRSSNESSGSSSNIKTSQSFSGIRQPKQIPKRIDQNANRV 66
Query: 657 VQANGVQPPPRTAI 698
++++ ++ P + +
Sbjct: 67 IKSSSMEVPSTSKV 80
>U40801-4|AAO91728.1| 873|Caenorhabditis elegans Hypothetical
protein F28E10.1c protein.
Length = 873
Score = 32.3 bits (70), Expect = 0.46
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +3
Query: 486 SPQGSPSVKICSLXVRVPKLGASSKDDL---DEIETDESASGVKLETDFEQSIDEIANKK 656
SP S + + S ++ LG SS + I+T +S SG++ + ID+ AN+
Sbjct: 103 SPLMSMANSVKSKLTKITHLGRSSNESSGSSSNIKTSQSFSGIRQPKQIPKRIDQNANRV 162
Query: 657 VQANGVQPPPRTAI 698
++++ ++ P + +
Sbjct: 163 IKSSSMEVPSTSKV 176
>U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical
protein F28E10.1a protein.
Length = 1134
Score = 32.3 bits (70), Expect = 0.46
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +3
Query: 486 SPQGSPSVKICSLXVRVPKLGASSKDDL---DEIETDESASGVKLETDFEQSIDEIANKK 656
SP S + + S ++ LG SS + I+T +S SG++ + ID+ AN+
Sbjct: 149 SPLMSMANSVKSKLTKITHLGRSSNESSGSSSNIKTSQSFSGIRQPKQIPKRIDQNANRV 208
Query: 657 VQANGVQPPPRTAI 698
++++ ++ P + +
Sbjct: 209 IKSSSMEVPSTSKV 222
>Z81065-3|CAH04732.1| 358|Caenorhabditis elegans Hypothetical
protein F16C3.3 protein.
Length = 358
Score = 31.9 bits (69), Expect = 0.61
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3
Query: 524 QGTDLYGR*ALRTRSRHSRGLT-DQTCRPPPAALTYY 417
QG+D+YG A + RHSR + QT PPP++ T Y
Sbjct: 166 QGSDVYGG-ATSSIRRHSRHVAMSQTATPPPSSRTVY 201
>Z29443-9|CAA82575.2| 292|Caenorhabditis elegans Hypothetical
protein T07C4.6 protein.
Length = 292
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +1
Query: 28 STVFIN*S*TK*LKISVYYDCGSKECTFCVSKPSNQVSVSAKMICTLFFAIT 183
S +++N S K + + Y+ S E FCV + SNQ+ +AK T F A+T
Sbjct: 122 SMIYLN-SMHKYIPVLTIYESPS-ESPFCVPQSSNQIVATAKFPHTEFIAVT 171
>AB019521-1|BAC66463.1| 292|Caenorhabditis elegans T-box
transcription factor TBX-9 protein.
Length = 292
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +1
Query: 28 STVFIN*S*TK*LKISVYYDCGSKECTFCVSKPSNQVSVSAKMICTLFFAIT 183
S +++N S K + + Y+ S E FCV + SNQ+ +AK T F A+T
Sbjct: 122 SMIYLN-SMHKYIPVLTIYESPS-ESPFCVPQSSNQIVATAKFPHTEFIAVT 171
>Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical protein
F20B10.1 protein.
Length = 1180
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -1
Query: 742 IKMFSISPGTLLVFLMAVLGGGWTPLA*TFLLAISSMLC 626
IK+FS+S + A++GGG L+ F+L +SS++C
Sbjct: 1093 IKIFSVSQNKQDLVSKAIIGGGILALS-LFILCMSSLIC 1130
>AL117202-18|CAB57896.3| 765|Caenorhabditis elegans Hypothetical
protein Y47D3A.22 protein.
Length = 765
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 64 LKISVYYDCGSKECTFCVSKPSNQVSVSAKMICTL 168
LKI+V ++CG C C K Q + K I T+
Sbjct: 726 LKIAVVFNCGHTACVDCADKLKKQCHICRKTIETM 760
>AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform b protein.
Length = 392
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 561 DDLDEIETDESASGVKLETD 620
DD+DE E DE S VK+ETD
Sbjct: 107 DDIDEEELDEDISRVKVETD 126
>AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform a protein.
Length = 787
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 561 DDLDEIETDESASGVKLETD 620
DD+DE E DE S VK+ETD
Sbjct: 107 DDIDEEELDEDISRVKVETD 126
>Z83236-10|CAB05780.2| 236|Caenorhabditis elegans Hypothetical
protein K10H10.4 protein.
Length = 236
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = +2
Query: 644 CQ*KGSGQWGPAAS*NRHKKHKQRSRRDTKHLNGYLPPESKRKXXDIXLVHXXXVXIIVE 823
C G + P ++HKK +++ R D+ + LPP RK I VH I E
Sbjct: 64 CSGGSGGGYYPRRRHHKHKKPRRKFRFDSDE-DEDLPPPPPRKSAKISRVHSEEQGFIEE 122
Query: 824 KTXXXE 841
K E
Sbjct: 123 KPRVTE 128
>AL032660-1|CAA21752.1| 711|Caenorhabditis elegans Hypothetical
protein Y70G10A.2 protein.
Length = 711
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -1
Query: 757 WG*IPIKMFSISPGTLLVFLMAVLGGGWTPLA*TFLLAISSMLCSKSVSSFTP 599
WG + +S G L FL+ + GW LA T+ ++C ++S + P
Sbjct: 330 WGVRIVPRMVLSVGMLAAFLLIIFQTGWNKLAATWTCV--GVICQDTISIWFP 380
>Z92777-5|CAB07171.1| 409|Caenorhabditis elegans Hypothetical
protein C17H1.7 protein.
Length = 409
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +3
Query: 519 SLXVRVPKLGASSKDDLDEIETDESASGVKLETDFEQSIDEIANKKVQANGVQ 677
++ V L +K DE +++ G+K+E Q+ DE+ + Q N ++
Sbjct: 144 NIFANVSALKDQNKRFQDECHSEKKQFGIKVEETTAQNNDEVLKESAQTNHIK 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,894,451
Number of Sequences: 27780
Number of extensions: 408537
Number of successful extensions: 1177
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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