Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B24
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   2.1  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   2.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   2.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.7  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              23   4.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   8.5  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 369 CVKLIVYLGTGEWIVEVVRQGGGRRAACL 455
           C  LIV  GTGE+   + + G  R  A L
Sbjct: 38  CAVLIVAAGTGEFEAGISKNGQTREHALL 66


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 369 CVKLIVYLGTGEWIVEVVRQGGGRRAACL 455
           C  LIV  GTGE+   + + G  R  A L
Sbjct: 54  CAVLIVAAGTGEFEAGISKNGQTREHALL 82


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 369 CVKLIVYLGTGEWIVEVVRQGGGRRAACL 455
           C  LIV  GTGE+   + + G  R  A L
Sbjct: 111 CAVLIVAAGTGEFEAGISKNGQTREHALL 139


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 126 WFRNAKGTFFRTTIIIHRYF*LFCSRSV 43
           +F+NAK   F+T  I + Y  L+  +++
Sbjct: 124 FFKNAKSVTFQTMTIPNHYLWLYKDKTI 151


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 588 ESASGVKLETDFEQSIDEIANKKVQ 662
           +S    K E DF   I ++ N+KVQ
Sbjct: 36  DSGIDEKKEDDFRNGIIDVENEKVQ 60


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 657 PFYWQFRQCFARNQSQAS 604
           P +W  R+ FAR ++  S
Sbjct: 330 PAFWSLRKAFARKKTDYS 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,979
Number of Sequences: 438
Number of extensions: 5229
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)