Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B22
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   0.84 
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    29   1.1  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    27   2.6  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    27   3.4  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    27   4.5  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    27   4.5  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    27   4.5  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    26   5.9  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   7.8  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 286 QEASNGPDKDRKIPNRIPVRDENDCDTRAYIKDDSVKIVTLMSAPI-IPNSA 438
           Q+ S  P    ++PN      +N+ + +  +K+DS K     SAPI +P S+
Sbjct: 28  QKKSISPSSGSELPNFKTTISQNNEEVKTSLKEDSSKFHPSASAPIFVPTSS 79


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 241 LYSGFRNCYNVNRQYQEASNGPDKDRKIPNRIPVRDENDCDT 366
           L + F   +N N+Q+Q     PDKD +I    PV     C T
Sbjct: 360 LTASFNKFFNANKQFQ-----PDKDERIQQEGPVEQRPLCPT 396


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +1

Query: 322 IPNRIPVRDENDCDTRAYIKDDSVKIVTLMSAPIIPNSARDITRIVNERVGMV 480
           +P  IPV  E+  DT+A +K  S + +T +   +I N+  DI R + E +  +
Sbjct: 173 LPQIIPVVSESMWDTKAEVKKQSKETMTKV-CTLIANA--DIDRFIPELINCI 222


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 69  DDWKSAERP-NYLTNVDLEYPVLRATVHSAVQAAQA 173
           ++WK +  P   L N+D E P+ RA VH  +   QA
Sbjct: 499 EEWKRSLPPFQILENLDAEDPLFRANVHLHMTYDQA 534


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 614 ASPSLSVPVSNRAARSPDSIAEACSSARQP 525
           +SPSLS+P   +   SP+  A A SS  +P
Sbjct: 656 SSPSLSIPTDFQKEASPNKGAAALSSKVEP 685


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 423 DGRAHERHYFDRVILDVSPGVAVVLVAHRDSVGDLAILVR 304
           DG A    +F    + +S   AV+L      +GDLAIL+R
Sbjct: 311 DGLAITSAFFTNTSIGISTTFAVLLHEIPAEIGDLAILLR 350


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/75 (21%), Positives = 30/75 (40%)
 Frame = +1

Query: 163 LLKLPFTGELIEHVDYWGEGSIVNGGLYSGFRNCYNVNRQYQEASNGPDKDRKIPNRIPV 342
           LL +P +    +  + +  GS       S + + Y+  R Y  ++    K R       V
Sbjct: 604 LLTMPKSEPKEQDSEGYSSGSETGSTYSSSYSSTYSRGRSYSRSTRSYSKSRSYSRSRSV 663

Query: 343 RDENDCDTRAYIKDD 387
              N+ + + YI+ D
Sbjct: 664 TPINNINHKKYIRKD 678


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 268 NVNRQYQEASNGPDKDRKIPNRIPVRDE 351
           NV +Q+Q+    P+ D +I   +P+ DE
Sbjct: 109 NVYKQHQDDLAPPEADNQITRDVPISDE 136


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = -1

Query: 303 PVAGLLVLSVYVVAVTEARIQSPVDDTSLTPVVDML 196
           P+  ++  +V    +  A + +PV++T+ TP+V+ +
Sbjct: 250 PMEAMITPTVETTTLPTAAMTTPVEETTTTPMVETM 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,215
Number of Sequences: 5004
Number of extensions: 59115
Number of successful extensions: 197
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)