Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B22
         (852 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49214| Best HMM Match : HSF_DNA-bind (HMM E-Value=2.40042e-42)      30   2.7  
SB_57214| Best HMM Match : Osteopontin (HMM E-Value=1.3)               29   6.3  
SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   6.3  
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_49214| Best HMM Match : HSF_DNA-bind (HMM E-Value=2.40042e-42)
          Length = 284

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 304 PDKDRKIPNRIPVRDENDCDTRAYIKDDSVKIVTLMSAP 420
           PD D  + N IP  D++D D+R  I+D S +      AP
Sbjct: 135 PDDDDDVHNIIPDDDDDDDDSRLMIQDSSEQEQAAKRAP 173


>SB_57214| Best HMM Match : Osteopontin (HMM E-Value=1.3)
          Length = 486

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 97  LGRSADFQSSCGSISCRPALIIGGQC 20
           LG+ + F+++  SIS RP L + GQC
Sbjct: 378 LGQCSQFKANTRSISIRPILAVLGQC 403


>SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1507

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = -2

Query: 176  GSLSSLYCAMYGSSEYXILQVHVGQVVGALGRLPVVVWIHLVSSCAHYRWTVCRRVV 6
            G  +  Y A +G+     + VHVG V+ A+   PV+    LVS+C +   T  R VV
Sbjct: 984  GDDADAYAAFFGT-----VCVHVGFVLVAVALGPVLAVTQLVSTCTYEMKTQKRHVV 1035


>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1146

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 294  QQRAGQGSQDPQQNPGARRERLRHPGLHQG*LGQNSDAHERAHHSEQRQRH 446
            QQ+  Q  Q  QQ    ++++ RH    Q     + D  ++ HH +Q+Q H
Sbjct: 1095 QQQHDQQQQHDQQQQHDQQQQQRHDQQQQ-----HHDQQQQQHHDQQQQHH 1140


>SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 267 QRKPTVPRGQQRAGQ--GSQDPQQNPGARRERLRHPGL 374
           ++KP  P  ++ A +   ++ PQQ+P   R+R RH  L
Sbjct: 93  EKKPKKPAAKKPAAKKPAAKSPQQSPRRSRQRRRHQSL 130


>SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 892

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -1

Query: 375 VSPGVAVVLVAHRDSVGDLAILVRPVAGLLVLSVYVVAVTEARIQSPVDDTS 220
           V+P  A+    HRD  G+    V  + G LV   Y V VT   +  P+  TS
Sbjct: 313 VTPDFALAFKQHRDIAGNYCCQVTNLEGELVGQRYFVTVT---VMQPLPSTS 361


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,669,509
Number of Sequences: 59808
Number of extensions: 502157
Number of successful extensions: 1529
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)