Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B20
         (856 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   2.3  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   2.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   5.4  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 688 PNPLXEGSSFXTPMLPSSELVSGMSSSISAPVPXR 584
           P+P   GS   +P   S  L   + + ++ P P R
Sbjct: 87  PSPTVSGSEMSSPGAGSGNLSPQIQTQVARPPPAR 121


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 688 PNPLXEGSSFXTPMLPSSELVSGMSSSISAPVPXR 584
           P+P   GS   +P   S  L   + + ++ P P R
Sbjct: 87  PSPTVSGSEMSSPGAGSGNLSPQIQTQVARPPPAR 121


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/47 (23%), Positives = 17/47 (36%)
 Frame = +3

Query: 525 CPVCNTTLPTSKLQRHALRCLXGTGAEMDEDIPDTSSEEGSIGVXND 665
           CP+CN     S      ++   G G +   D    S E     + N+
Sbjct: 377 CPICNKRFMRSDHLAKHVKTHNGNGKKGSSDSCSDSEENSQSDITNN 423


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,623
Number of Sequences: 336
Number of extensions: 3481
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23659332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)