Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B20
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    29   0.84 
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    28   1.9  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    27   2.6  
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    26   5.9  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    26   5.9  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    26   7.8  

>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 204 RKKVSELPNCPVCSCTVRQGELEHHLDLELARLNKLTGSASKRK 335
           ++K  +L +CP CS  V   ++  HLD  L   +  + S+S  K
Sbjct: 150 KRKREDLVHCPACSNLVPHNQINQHLDSCLNSPSSPSSSSSPYK 193



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
 Frame = +3

Query: 525 CPVCNTTLPTSKLQRHALRCLXGTGAEMDEDIP----DTSSEEGSIGVXNDEPS 674
           CP C+  +P +++ +H   CL    +      P    D S     +    D+ S
Sbjct: 159 CPACSNLVPHNQINQHLDSCLNSPSSPSSSSSPYKNKDNSKSNSLLSFKTDDDS 212


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 124 QPSMLLYIKTGNILEINLKFVLF*VFYKSDYI 29
           QP +LL +   NIL +     LF  FY  DYI
Sbjct: 542 QPLLLLSVMKSNILRLFYVLFLFACFYGLDYI 573


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 126 SNNVNEHNTNYGQIYDENVILNSVRSRKKVSELPN 230
           S  +N+ +T Y QIY+    L++V+S   + +LPN
Sbjct: 105 SGLMNQESTYYPQIYEILESLSNVKSAVLIVDLPN 139


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 540 TTLPT-SKLQRHALRCLXGTGAEMDEDIPDTSSEEGSIGVXN 662
           T +P   + QRH LR L G     +ED+   SS++ S  + N
Sbjct: 138 TNIPLLEEKQRHVLRLLVGPRYNPEEDLVRISSDKYSSALQN 179


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 231 CPVCSCTVRQGELEHHLD 284
           CPVC+ TV   ++  HLD
Sbjct: 9   CPVCAKTVTMNDINPHLD 26


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 169 YICP*LVLCSFTLFEQPSMLLYIKTGNIL 83
           YI    V C  +LFE PS+L YI   N+L
Sbjct: 257 YILNVTVSCG-SLFEMPSLLNYITAPNVL 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,228
Number of Sequences: 5004
Number of extensions: 54987
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)