Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B19
         (839 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...   164   9e-43
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.2  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score =  164 bits (398), Expect = 9e-43
 Identities = 88/216 (40%), Positives = 132/216 (61%), Gaps = 8/216 (3%)
 Frame = +3

Query: 6   FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 185
           FE +    ++ + VK  GY +PT IQ    P+ +SG++L+  AQTGSGKT A++LP I +
Sbjct: 160 FETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIHN 219

Query: 186 I--NNQPPIRRGD--GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQA 353
           +  +  PP    +   P+ ++++PTRELA QI      F + S V+   ++GG     Q 
Sbjct: 220 LLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQR 279

Query: 354 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKII-EQIR 530
             +  G  I++ATPGRL DF+ +G  +     Y VLDEADRMLDMGF   + +++  Q  
Sbjct: 280 GRILGGCHILVATPGRLKDFVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQSM 339

Query: 531 P---DRQTLMWSATWPKEVKKLAEDYLGDYIQINIG 629
           P   +RQTLM+SAT+P+EV++LA  +L +YI I +G
Sbjct: 340 PATGERQTLMFSATFPEEVQQLAGKFLLNYIFIAVG 375


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 197  LVVYVHNGWQDVGQRFAGTRLGY 129
            L+V  H+ W D   +F     GY
Sbjct: 1442 LIVKAHDSWADFDNQFYKRVTGY 1464


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,343
Number of Sequences: 336
Number of extensions: 4726
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23140487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)