Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_B19
(839 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 340 2e-94
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 229 5e-61
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 191 1e-49
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 187 2e-48
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 178 9e-46
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 149 6e-37
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 138 9e-34
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 134 2e-32
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 132 8e-32
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 129 4e-31
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 119 4e-28
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 119 6e-28
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 112 5e-26
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 112 7e-26
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 111 9e-26
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 111 2e-25
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 110 2e-25
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 108 8e-25
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 101 1e-22
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 99 4e-22
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 88 2e-18
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 86 5e-18
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 70 4e-13
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 37 0.003
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 37 0.003
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 36 0.009
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 31 0.20
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.27
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 29 0.62
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 2.5
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 27 3.3
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 27 4.4
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 26 7.6
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 26 7.6
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 26 7.6
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 26 7.6
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 340 bits (835), Expect = 2e-94
Identities = 156/230 (67%), Positives = 189/230 (82%)
Frame = +3
Query: 6 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 185
FEEA FP+YV + VK +G++ PTPIQ Q WP+AMSG+++VG++ TGSGKTL+Y LPAIVH
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 186 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 365
IN QP + GDGPI LVLAPTRELA QIQQ FG +S +RNTCV+GG P+ Q RDL
Sbjct: 184 INAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLI 243
Query: 366 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 545
RGVEI IATPGRL+D L+ TNL+R TYLVLDEADRMLDMGFEPQIRKI++QIRPDRQT
Sbjct: 244 RGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 303
Query: 546 LMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEK 695
+M+SATWPKEV++LA DYL DYIQ+ +GSL L+A+HNI QIV++ +K
Sbjct: 304 VMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADK 353
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 229 bits (559), Expect = 5e-61
Identities = 108/220 (49%), Positives = 154/220 (70%), Gaps = 3/220 (1%)
Frame = +3
Query: 45 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 224
+ ++GY++PT IQAQ P SG++++GVA+TGSGKT+A++LP HI +Q P++ G+GP
Sbjct: 433 INSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGP 492
Query: 225 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 404
IA+++ PTRELA QI + F +R C +GGAP ++Q DL+RG EIV+ TPGR+
Sbjct: 493 IAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRM 552
Query: 405 IDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 575
ID L TNL RCTYLVLDEADRM D+GFEPQ+ +II IRPDRQT+++SAT+P+
Sbjct: 553 IDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRA 612
Query: 576 VKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEK 695
++ LA L ++I +G + A+ + QIV++ E K
Sbjct: 613 MEALARKVLKKPVEITVGGRSVVAS-EVEQIVEVRPEESK 651
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 191 bits (465), Expect = 1e-49
Identities = 103/233 (44%), Positives = 150/233 (64%), Gaps = 6/233 (2%)
Frame = +3
Query: 6 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 185
F+E + +++G+K YKEPTPIQA WP ++G+++VG+A+TGSGKT+A+ +PA+ +
Sbjct: 169 FDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 186 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 365
+N + P LV++PTRELA Q + + ++ V+GGAPK EQAR
Sbjct: 227 LNGLSDNK--SVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQAR-AA 283
Query: 366 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD--- 536
+ ++I TPGRL+D + G+ + + YLVLDEADRMLD GFE IR II PD
Sbjct: 284 KNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISH-TPDPTR 342
Query: 537 ---RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQE 686
RQT+ +SATWP+ V+ LA +L D ++I IGS +L+A+ NI QIV+I +
Sbjct: 343 NGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDD 395
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 187 bits (455), Expect = 2e-48
Identities = 101/239 (42%), Positives = 151/239 (63%), Gaps = 17/239 (7%)
Frame = +3
Query: 30 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI-VHINNQP-- 200
++ Q +K GY +PTP+Q PI SG++L+ AQTGSGKT ++ P + + + P
Sbjct: 179 HLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAA 238
Query: 201 -PIRRGDG---------PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQ 350
P+ + G P L+LAPTREL QI + + F + S+VR V+GGA R Q
Sbjct: 239 VPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQ 298
Query: 351 ARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 530
R +++G +++ ATPGRL+D +++G +L +LVLDEADRMLDMGFEPQIR I+E
Sbjct: 299 IRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGAD 358
Query: 531 ----PDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEK 695
+RQTLM+SAT+P++++ LA D+L DY+ +++G + S + NI Q V ++ EK
Sbjct: 359 MTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVG-STSENITQKVVHVEDSEK 416
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 178 bits (433), Expect = 9e-46
Identities = 102/253 (40%), Positives = 146/253 (57%), Gaps = 22/253 (8%)
Frame = +3
Query: 6 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 185
+EEA P + + +K + YKEP+ IQ P+ + K+L+G+A+TGSGKT A+I+P I+
Sbjct: 251 WEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIA 310
Query: 186 INNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQAR 356
I+ PP+ + GP A+VLAPTRELAQQIQ F R V GG EQ+
Sbjct: 311 ISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSF 370
Query: 357 DLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 536
+ +G IV+ATPGRL+D LE+ L +CTY+V+DEADRMLDMGFE + KI+ +
Sbjct: 371 QMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSS 430
Query: 537 -------------------RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNI 659
RQT+M+SAT P V LA+ YL + + + IG++ A +
Sbjct: 431 NASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIG-QAVDRV 489
Query: 660 LQIVDICQEHEKE 698
Q V++ + K+
Sbjct: 490 EQRVEMISDDSKK 502
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 149 bits (360), Expect = 6e-37
Identities = 85/212 (40%), Positives = 129/212 (60%), Gaps = 3/212 (1%)
Frame = +3
Query: 6 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 185
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+AQTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 186 I-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL 362
+ NN P A+VLAPTRELA QI + G + VR+ + GG QA L
Sbjct: 108 LWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVAL 161
Query: 363 ERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 536
+ +++ TPGRL+D LE KG +L+ YL++DEADR+LDM F P I KI++ I +
Sbjct: 162 SKKPHVLVCTPGRLMDHLENTKG-FSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHE 220
Query: 537 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGS 632
R+TL++SAT +V+KL L +++ + S
Sbjct: 221 RRTLLFSATMTSKVEKLQRASLHQPVRVAVSS 252
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 138 bits (334), Expect = 9e-34
Identities = 72/207 (34%), Positives = 116/207 (56%)
Frame = +3
Query: 6 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 185
F+ + + + G+K PTPIQ + P+ + G+++VG+A+TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 186 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 365
+ + AL+L+P RELA Q +V DF + +R+ + GG EQ L
Sbjct: 131 LKST---LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLS 187
Query: 366 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 545
+IV+ATPGR + + L Y+V DEADR+ +MGF Q+ +I+ + RQT
Sbjct: 188 GKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQT 247
Query: 546 LMWSATWPKEVKKLAEDYLGDYIQINI 626
L++SAT P+ + A+ L D + + +
Sbjct: 248 LLFSATLPRTLVDFAKAGLQDPVLVRL 274
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 134 bits (323), Expect = 2e-32
Identities = 78/200 (39%), Positives = 128/200 (64%), Gaps = 5/200 (2%)
Frame = +3
Query: 6 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI-- 179
F + + +Q+ +K MG++ T IQ + P ++G++++G A+TGSGKTLA+++P I
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM 150
Query: 180 VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 359
++ P R G G ++++PTRELA QI VA + + V GGA +R +A
Sbjct: 151 LYALKFKP-RNGTG--VIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADK 207
Query: 360 LERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI-R 530
L +GV +++ATPGRL+D L+ KG + LV+DEADR+L++GFE ++R+I++ +
Sbjct: 208 LVKGVNLLVATPGRLLDHLQNTKGFV-FRNLRSLVIDEADRILEIGFEDEMRQIMKILPS 266
Query: 531 PDRQTLMWSATWPKEVKKLA 590
+RQTL++SAT +V+ LA
Sbjct: 267 ENRQTLLFSATQTTKVEDLA 286
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 132 bits (318), Expect = 8e-32
Identities = 69/207 (33%), Positives = 113/207 (54%)
Frame = +3
Query: 6 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 185
FE+ + G+ G++ P+PIQ + PIA+SG++++ A+ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 186 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 365
++ + + L+L PTRELA Q QV G V+ GG R+ L
Sbjct: 106 VDTKKSKIQ-----TLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLN 160
Query: 366 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 545
V IV+ TPGR++D KG + CT V+DEAD++L F P I +++ +RQ
Sbjct: 161 DTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQI 220
Query: 546 LMWSATWPKEVKKLAEDYLGDYIQINI 626
++SAT+P VK + +L +IN+
Sbjct: 221 SLYSATFPLIVKNFMDKHLNKPYEINL 247
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 129 bits (312), Expect = 4e-31
Identities = 74/230 (32%), Positives = 125/230 (54%), Gaps = 1/230 (0%)
Frame = +3
Query: 6 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 185
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 186 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 365
+ +P ++ L+L PTRELA Q VA + + GG + Q ++L
Sbjct: 321 LLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELR 378
Query: 366 RGVEIVIATPGRLIDFLEKGT-TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 542
+ +IVIATPGR ID + ++ +V+DEADRML+ GF ++ +II+ RQ
Sbjct: 379 KRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQ 438
Query: 543 TLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHE 692
T+++SAT +V L L +++ + + + +A + V + + E
Sbjct: 439 TMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRE 488
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 119 bits (287), Expect = 4e-28
Identities = 67/213 (31%), Positives = 115/213 (53%)
Frame = +3
Query: 6 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 185
F++ N + +G+ G++ P+ IQ + + ++++ AQ+G+GKT + + +
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 186 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 365
I+ +++ AL+LAPTRELAQQIQ+V G V GG R+ L+
Sbjct: 81 IDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQ 135
Query: 366 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 545
GV +V+ TPGR+ D +++ VLDEAD ML GF+ QI I + + P Q
Sbjct: 136 AGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQV 195
Query: 546 LMWSATWPKEVKKLAEDYLGDYIQINIGSLQLS 644
++ SAT P++V ++ ++ D I+I + +L+
Sbjct: 196 VLLSATMPQDVLEVTTKFMRDPIRILVKKDELT 228
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 119 bits (286), Expect = 6e-28
Identities = 71/197 (36%), Positives = 108/197 (54%), Gaps = 1/197 (0%)
Frame = +3
Query: 3 YFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 182
+F E + +K + T IQ Q P A+ G++++G A+TGSGKTLA+I+P I
Sbjct: 40 HFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIE 99
Query: 183 HINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL 362
++ + DG ALV++PTRELA Q + G + GG +E+ L
Sbjct: 100 NLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERL 158
Query: 363 ERGVEIVIATPGRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 539
R + I++ TPGRL+ +++ + L+LDEADR+LDMGF + I+ + R
Sbjct: 159 SR-MNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHR 217
Query: 540 QTLMWSATWPKEVKKLA 590
QT+++SAT K VK LA
Sbjct: 218 QTMLFSATQTKSVKDLA 234
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 112 bits (270), Expect = 5e-26
Identities = 71/196 (36%), Positives = 105/196 (53%), Gaps = 10/196 (5%)
Frame = +3
Query: 6 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 185
F+ N +++ V G+K+ TP+QA P+ + K+LV A TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 186 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF---------GHTSYVRNTCVFG-GA 335
+ + G G AL++APTRELA QI V + G V + + G G
Sbjct: 63 VTRRDTDETGLG--ALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGT 120
Query: 336 PKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKI 515
+ A E+ +VI TPGRL + L + + L+LDEAD ++DMGF+ ++ I
Sbjct: 121 LTNDLASFREKNPSVVIGTPGRLNEMLSH--ISSKHLEILILDEADTLIDMGFQRTLQSI 178
Query: 516 IEQIRPDRQTLMWSAT 563
I Q+ R+T ++SAT
Sbjct: 179 ISQLPKQRRTGLFSAT 194
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 112 bits (269), Expect = 7e-26
Identities = 72/242 (29%), Positives = 122/242 (50%), Gaps = 3/242 (1%)
Frame = +3
Query: 6 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 185
F + N +Q+ + +++PT +Q++ P+A+ GK+LV A+TGSGKT AY++P +
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 186 INNQPPIRRGD-GPIALVLAPTRELAQQIQQVAADFGH--TSYVRNTCVFGGAPKREQAR 356
+ Q I G AL+L PTRELAQQ+ V + ++R V + Q
Sbjct: 76 LLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRP 135
Query: 357 DLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 536
L +IVIATP R + + G L + +LV+DEAD ML G+ ++ + +
Sbjct: 136 LLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRG 195
Query: 537 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKEIIXCII 716
Q+ + SAT K + L + + + + + A+ + Q V C E +K ++ I+
Sbjct: 196 TQSFLMSATLSKNIASLQKLVCRNPFILAVKDKE--ASGKLTQYVVKCSEQDKFLLAYIL 253
Query: 717 AR 722
+
Sbjct: 254 LK 255
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 111 bits (268), Expect = 9e-26
Identities = 63/205 (30%), Positives = 108/205 (52%)
Frame = +3
Query: 6 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 185
FEE N + + +G+ GY+ P+ +Q++ G++++ AQ+G+GKT + + +
Sbjct: 23 FEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQS 82
Query: 186 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 365
I+ +R AL+L+PTRELA QIQ V G V+ GG + L+
Sbjct: 83 IDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLD 137
Query: 366 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 545
G +V TPGR+ D + + + L+LDEAD +L+ GF+ QI I + P Q
Sbjct: 138 YGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQV 197
Query: 546 LMWSATWPKEVKKLAEDYLGDYIQI 620
++ SAT P++V ++ + + ++I
Sbjct: 198 VVVSATLPQDVLEMTNKFTTNPVRI 222
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 111 bits (266), Expect = 2e-25
Identities = 69/200 (34%), Positives = 104/200 (52%), Gaps = 6/200 (3%)
Frame = +3
Query: 6 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 185
F + ++ +K + EPT IQ + G+N +G A+TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 186 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 365
+ P G AL+L PTRELA QI + A G +++ + GG Q+ DL
Sbjct: 69 WSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLS 123
Query: 366 RGVEIVIATPGRLIDFL----EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI-- 527
+ +V+ATPGRL D + E+ L+R +LV+DEADR+L F + +
Sbjct: 124 KRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPA 183
Query: 528 RPDRQTLMWSATWPKEVKKL 587
DRQTL+++AT +++L
Sbjct: 184 SEDRQTLLFTATVTDAIRQL 203
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 110 bits (265), Expect = 2e-25
Identities = 75/210 (35%), Positives = 113/210 (53%), Gaps = 21/210 (10%)
Frame = +3
Query: 54 MGYKEPTPIQAQGWPIAMS--GKNLVGVAQTGSGKTLAYILPAIVHINNQPPI--RRGDG 221
M PT IQ+ P ++ K+ AQTGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 222 PIALVLAPTRELAQQIQQVAADFGH---TSYVRNTCVFGGAPKREQARDLERGVEIVIAT 392
A+++APTREL QQI VA + + ++ + V GG K+ + + +GV I+I T
Sbjct: 217 IYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGT 276
Query: 393 PGRLIDFLEK-GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR------------P 533
PGRL D LE ++ + ++VLDE DR++DMGFE + KI+ + P
Sbjct: 277 PGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIP 336
Query: 534 DRQ-TLMWSATWPKEVKKLAEDYLGDYIQI 620
R+ T++ SAT VK+L++ L D + +
Sbjct: 337 SRKVTMLCSATMKDTVKRLSDSALKDALYL 366
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 108 bits (260), Expect = 8e-25
Identities = 72/232 (31%), Positives = 125/232 (53%), Gaps = 3/232 (1%)
Frame = +3
Query: 6 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVGVAQTGSGKTLAYILPAI 179
FEE + +G+ +M +++P+ IQ + P+ +S +N++G +Q+G+GKT A+ L +
Sbjct: 116 FEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTML 175
Query: 180 VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 359
++ P P A+ LAP+RELA+QI V + G + V+ FG K +
Sbjct: 176 SRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEVKTA--FG--IKDSVPKG 226
Query: 360 LERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPD 536
+ +IVI TPG ++D +++ + + VLDEAD MLD G Q +I + +
Sbjct: 227 AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRN 286
Query: 537 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHE 692
Q +++SAT+ + V+K AE + + +I + + +LS I Q+ CQ E
Sbjct: 287 TQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSV-EGIKQLYMDCQSEE 337
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 101 bits (243), Expect = 1e-22
Identities = 67/184 (36%), Positives = 103/184 (55%), Gaps = 8/184 (4%)
Frame = +3
Query: 57 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--A 230
G+ +P PIQ+ P A G +++G A TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 231 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 410
LV+APTRELA QI Q + +R + GG ++Q R L + +V+ATPGRL
Sbjct: 196 LVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWS 255
Query: 411 FLEKG--TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE----QIRPDRQTLMWSATWPK 572
+ + T N ++ LVLDEADR+L ++ K++E + RQT ++SAT+ +
Sbjct: 256 VINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDE 315
Query: 573 EVKK 584
+++
Sbjct: 316 GLQQ 319
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 99 bits (238), Expect = 4e-22
Identities = 69/212 (32%), Positives = 110/212 (51%), Gaps = 5/212 (2%)
Frame = +3
Query: 3 YFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLVGVAQTGSGKTLAYILPAI 179
+ E A+ + + G+++ TP+Q + + + +N V A+TG+GKTLA++L A
Sbjct: 39 FSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAF 98
Query: 180 VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 359
+ P +++L+PTRELA QI + A + + +R + GG K +
Sbjct: 99 KDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENA 158
Query: 360 LERG-VEIVIATPGRLIDFLEKGTTNLQRCT-YLVLDEADRMLDMGFEPQIRKIIEQIRP 533
+ RG ++IATPGRL D L+ T +LDEADR++DMGF I I E +
Sbjct: 159 IRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTT 218
Query: 534 DR-QTLMWSATWPKEVKKLAEDYLG-DYIQIN 623
+ + L +SAT P +V + LG D+ IN
Sbjct: 219 TKTRKLCFSATMPPKVSNVFRGILGTDFKLIN 250
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 87.8 bits (208), Expect = 2e-18
Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 3/206 (1%)
Frame = +3
Query: 21 FPDYVQ-QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 197
FP+ + + +K E T IQ P S ++L+ A TGSGKT+AY+ P + +
Sbjct: 52 FPEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLH 111
Query: 198 PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK-REQARDLERGV 374
P G A+++APTREL +QI + A + ++ + K +E+A L
Sbjct: 112 VP----GGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKY 167
Query: 375 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR-QTLM 551
++ I TP RL+ ++ G + ++ + V+DEADR+ + GF Q I+ +
Sbjct: 168 DMCIGTPMRLVQAIQTG-LSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSL 226
Query: 552 WSATWPKEVKKLAEDYLGDYIQINIG 629
+SAT P V++LA+ D I+I +G
Sbjct: 227 FSATIPSRVEELAKVVTVDPIRIIVG 252
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 86.2 bits (204), Expect = 5e-18
Identities = 58/215 (26%), Positives = 109/215 (50%), Gaps = 6/215 (2%)
Frame = +3
Query: 39 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 218
+ + G++ P+ +Q P ++ G +++ A++G GKT ++L + I P+ D
Sbjct: 64 RAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---D 117
Query: 219 GPIA-LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKR---EQARDLERGVEIV 383
G ++ LVL TRELA QI+ A F + VR +GG + E +D + IV
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177
Query: 384 IATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMWSA 560
+ATPGRL + + + + VLDE D++L+ + I+++ P +Q +M+SA
Sbjct: 178 VATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSA 237
Query: 561 TWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQ 665
T E++ + + ++ + ++I + H + Q
Sbjct: 238 TLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQ 272
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 70.1 bits (164), Expect = 4e-13
Identities = 43/150 (28%), Positives = 81/150 (54%), Gaps = 6/150 (4%)
Frame = +3
Query: 96 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 275
P+ G ++ A TGSGKTL+Y++P + ++++ R +V+ PTREL Q+ +
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR----CVVIVPTRELTVQVAK 223
Query: 276 VAADFGHTSYVRNTCVFGGAPKREQARDL-----ERGVEIVIATPGRLIDFLEKGTT-NL 437
+ + ++ G R + L E ++++++TPGRL+D + + +L
Sbjct: 224 TFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSL 283
Query: 438 QRCTYLVLDEADRMLDMGFEPQIRKIIEQI 527
Q Y+V+DEADR+LD F+ + ++ +I
Sbjct: 284 QHLRYMVIDEADRLLDQSFQDWVDTVMMEI 313
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +3
Query: 117 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 269
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +3
Query: 117 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 269
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 35.5 bits (78), Expect = 0.009
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 1/141 (0%)
Frame = +3
Query: 219 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 398
G + L TR +++ Q DF G P R L++G+E VI TP
Sbjct: 93 GRVERRLVCTRSISRHSNQKLLDFCVECKKHKIKCVGNFPC---GRCLKKGLECVIETPP 149
Query: 399 RLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE-PQIRKIIEQIRPDRQTLMWSATWPKE 575
RL+ ++ + NLQR +++ + M M + P + I ++ Q T+P +
Sbjct: 150 RLLMNKDEISLNLQRLSHMETILSKLMPSMSLDLPSLEAKIAELSESLQ------TYPDK 203
Query: 576 VKKLAEDYLGDYIQINIGSLQ 638
V L + LG Y Q+ + Q
Sbjct: 204 V--LTDIELGSYQQVTLNETQ 222
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 31.1 bits (67), Expect = 0.20
Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Frame = +3
Query: 120 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 299
L+ VA+TGSGKT LP +H + +G+ I P R A VAA
Sbjct: 437 LLIVAETGSGKTTQ--LPQFLH---EAGYTKGNKKICCT-QPRRVAA---MSVAARVAKE 487
Query: 300 SYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI-DFLEKGTTNLQRCTYLVLDEA-D 473
VR G + + E A E+ V I T G L+ +FL + +L + +++DEA +
Sbjct: 488 MDVRLGQEVGYSIRFENATS-EKTV-IKYLTDGMLLREFLTE--PDLASYSVIIIDEAHE 543
Query: 474 RMLDMGFEPQIRKIIEQIRPDRQTLMWSAT 563
R L + K I + RPD + L+ SAT
Sbjct: 544 RTLHTDILFGLVKDIARFRPDLKVLISSAT 573
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.7 bits (66), Expect = 0.27
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +3
Query: 105 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 263
+SGK++ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 29.5 bits (63), Expect = 0.62
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Frame = +3
Query: 114 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 293
+N++ TG GKT + A+V +N +R + +APT+ L Q Q+ A +
Sbjct: 87 ENVLVALPTGLGKTF---IAAVVMMNY---LRWFPKSYIVFMAPTKPLVTQ--QMEACYK 138
Query: 294 HTSYVRN-TCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 470
T ++ T G + + TP +++ ++ G + R + LV+DEA
Sbjct: 139 ITGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQTILNDIKHGICDRTRISCLVIDEA 198
Query: 471 DR 476
R
Sbjct: 199 HR 200
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 54 MGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHINN 194
+ Y+ IQ+ +PIA + +N++ A TG+GKT +L + I+N
Sbjct: 273 LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 222 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 365
PI ++ +P E+ ++V D Y+ TC+ P+ E + DLE
Sbjct: 93 PIDIIFSPGEEVF--FERVGGDI--PVYLSGTCIITNIPEEEDSSDLE 136
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 26.6 bits (56), Expect = 4.4
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +3
Query: 42 GVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 218
GV +GY + P G P+ ++GK + V GK +L + + + P ++RGD
Sbjct: 279 GVVAIGYGDGFPQVRNGCPVIINGKRVPTV-----GKVCMDML--AIDVTDVPDVKRGD 330
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Frame = +2
Query: 140 GFRQNVGLHLASHC-------AHKQPTAYSER*WSDCFGLGAYQRVSTTNSASCCRFW 292
GF + G + HC H++ AY E F Y R++T + C R W
Sbjct: 33 GFSCSTGEKIFEHCYRDNINEKHREAAAYGEAIRQVAFSKD-YSRMATVSEDKCLRLW 89
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 7.6
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Frame = +3
Query: 279 AADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR-LIDFL---EKGTTNLQRC 446
A FG S + C G KR RD+ G + ++ PG +D L K +L
Sbjct: 215 APKFGDRSCYQLPCNARGLAKRAILRDVREGADGIMVKPGTPYLDILAMASKLADDLPIA 274
Query: 447 TYLVLDE 467
TY V E
Sbjct: 275 TYQVSGE 281
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 25.8 bits (54), Expect = 7.6
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Frame = +2
Query: 113 KEFSWRSPNGFRQNVGLHL------ASHCAHKQPTAYSER*WSDCFGLGAYQRVSTTNSA 274
KE W F +G+ L A AHKQ ER + L ++Q + S
Sbjct: 155 KENWWPLKETFENKLGVQLSYLDGDAGIIAHKQTQETHERIRNWLSSLNSWQLAAFERSV 214
Query: 275 SCCR 286
SCC+
Sbjct: 215 SCCK 218
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 516 IEQIRPDRQTLMWSATWPKEVKKLAED 596
I + R +R TL S +P+E K L+ED
Sbjct: 268 IRKKRSERDTLNVSTEFPEETKDLSED 294
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,462,265
Number of Sequences: 5004
Number of extensions: 74504
Number of successful extensions: 275
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -