Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B18
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   3.4  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    26   5.9  

>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1060

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 185  YGAPVWCRALTRRNVVALRRPQRAIAVRAIRG 280
            YG    C+ LT  N+ A  R Q   AVR + G
Sbjct: 1011 YGPSFICKLLTHENISASHRQQLQSAVRNVLG 1042



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 410 GEGAIRARRLQSRRSVLEAWSRRLADPSAGLRT 508
           G   IRAR+    RS    WS R+  P+ G  T
Sbjct: 239 GSNTIRARQTTRTRSNTLPWSPRVFGPTLGYNT 271


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 674 RRSHSGDTPSSVPSGQRDAGTGRNTHGR*AFASTG 570
           R+  +GD P  V  G+   G G  T GR   A  G
Sbjct: 276 RKYRAGDDPDKVDEGEFIPGVGAGTIGRIRLADFG 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,184,782
Number of Sequences: 5004
Number of extensions: 64467
Number of successful extensions: 176
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)