Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B18
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr...    29   5.5  
U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical pr...    29   5.5  
U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear r...    29   5.5  
DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determini...    29   5.5  
AL110498-6|CAL69744.1|  109|Caenorhabditis elegans Hypothetical ...    29   5.5  
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.      29   5.5  
Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z83120-6|CAB76722.1|  809|Caenorhabditis elegans Hypothetical pr...    28   9.6  
AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical...    28   9.6  

>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical
           protein F58G4.1 protein.
          Length = 1974

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 87  RRLDR*VGSCQTSEGLTRWCAASTWGWCGLLHYTEP 194
           R+LD+ VG       +  WC   +W W  L    +P
Sbjct: 813 RKLDQKVGLIVLQRNIRAWCTLRSWSWFKLFGRVKP 848


>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical
           protein F26A3.8 protein.
          Length = 1601

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -2

Query: 640 FPPGNAMQVPAETPMAGKHLRQPEGETPLVTVRPFREDRAHRLDGPETGRRVRQAARPRL 461
           F P   + +  ET M  + LR+ + +   V    FR+D   ++    TG+ + + A   L
Sbjct: 469 FTPTRVIYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKLLDRTANKYL 528

Query: 460 QH 455
           +H
Sbjct: 529 EH 530


>U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C9.7 protein.
          Length = 451

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 517 RLDGPETGRRVRQAARPRLQHRPPRLEPPRS 425
           R   P   RR R + +PR + R PR E PRS
Sbjct: 154 RRRSPSPKRRRRPSEKPRKRSRSPRRERPRS 184


>U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 3 protein.
          Length = 126

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
 Frame = +1

Query: 154 LRGGGAVYCIIRSPRVVPRL---DSQKRRGAATPAACNRSQGDSWIPHRLLRGGVRSRRD 324
           +RG    Y I+  P  +  L   D  +++  A  A  +R +G        +RGG   R  
Sbjct: 60  IRGNNIRYIILPDPLALDTLLIDDEPRKKARAARAGASRGRGRGG-----MRGGRGGRGR 114

Query: 325 ASLGPGGGGAR 357
              GP GGG R
Sbjct: 115 GRGGPRGGGPR 125


>DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determining
           protein MOG-3 protein.
          Length = 451

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 517 RLDGPETGRRVRQAARPRLQHRPPRLEPPRS 425
           R   P   RR R + +PR + R PR E PRS
Sbjct: 154 RRRSPSPKRRRRPSEKPRKRSRSPRRERPRS 184


>AL110498-6|CAL69744.1|  109|Caenorhabditis elegans Hypothetical
           protein Y64G10A.11 protein.
          Length = 109

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +2

Query: 599 GCFGRYLHRVARREPTMECHHCDCDEDTVXHTLA-YCPAWVEXP 727
           GC G++     R+  T+  H       T  HT+A  CP WV  P
Sbjct: 36  GCNGKFQSCAVRQPKTIYFHTYKKVNRTRRHTVAECCPGWVHRP 79


>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
          Length = 1601

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -2

Query: 640 FPPGNAMQVPAETPMAGKHLRQPEGETPLVTVRPFREDRAHRLDGPETGRRVRQAARPRL 461
           F P   + +  ET M  + LR+ + +   V    FR+D   ++    TG+ + + A   L
Sbjct: 469 FTPTRVIYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKLLDRTANKYL 528

Query: 460 QH 455
           +H
Sbjct: 529 EH 530


>Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical
           protein C27B7.7 protein.
          Length = 1471

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 392 RGEPRPGEGAIRARRLQSRRSVLEAWSRRLADPSAGL 502
           RG+PRP      + R  + +  ++ WSR  A  SAG+
Sbjct: 470 RGKPRPSISVAISDRKNASQVEVDVWSRLQATSSAGI 506


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 164 VVRSIALYGAPVWCRALTRRNVVALRRPQRAIAVRAIRG 280
           +++  ALYGAP W   L+  N+  L    R+ A+RA  G
Sbjct: 689 LIKPTALYGAPAWTSLLSDTNLEKLEIAYRS-ALRACVG 726


>Z83120-6|CAB76722.1|  809|Caenorhabditis elegans Hypothetical
           protein R06A4.9 protein.
          Length = 809

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 737 QGHGXAPPMRGNMRAYXRPCPRRSHSGDTP 648
           QG+G    M GN   + RP P+ S+ G  P
Sbjct: 616 QGYGPPGRMGGNQGGWQRPPPQGSYGGQGP 645


>AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical
           protein Y37E3.13 protein.
          Length = 472

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = +2

Query: 614 YLHRVARREPTMECHHCDCDEDTVXHTLAYCPAWVEXPRVLVSQ 745
           YLH      P   C +C+ D+D V  T   C  W +     V Q
Sbjct: 369 YLHTKVLEIPHDSCEYCEVDDDDVDDT---CEDWGDAETAAVRQ 409


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,128,342
Number of Sequences: 27780
Number of extensions: 442762
Number of successful extensions: 1557
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1555
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)