Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B18
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.6  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   3.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 575 TGR*DALGHGSPISRGPGAPPRRSG 501
           TGR    GHG   SRG G    R+G
Sbjct: 78  TGRGKGRGHGKGGSRGRGGNRGRTG 102


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
 Frame = +3

Query: 375 VVTFATGGNHVP--EK--EQLERGGS 440
           V   A GGNH+P  EK  E   RGGS
Sbjct: 130 VRALAAGGNHLPFHEKLVESFPRGGS 155


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 556 LVTVRPFREDRAHRLDGPETGRRV 485
           LV V PF +    ++D P  GR +
Sbjct: 617 LVVVSPFDDSNVVQIDSPVWGRHI 640


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 653 CHHCDCDEDTVXHTLAYCPAWVEXPRVLVS 742
           C  C    D + HT+ YCP   + P  L +
Sbjct: 75  CPICGACGD-IAHTVKYCPKGTKNPGTLAT 103


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 556 LVTVRPFREDRAHRLDGPETGRRV 485
           LV V PF +    ++D P  GR +
Sbjct: 617 LVVVSPFDDSNVVQIDSPVWGRHI 640


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/47 (23%), Positives = 19/47 (40%)
 Frame = -2

Query: 151 AAHHRVRPSDVWQEPTQRSSRRHQSGGQLLEMSAEVPTTVQFETEVP 11
           A +  + P D  +   Q  S  H +   + +   +VP  V    E+P
Sbjct: 164 AMNFLIYPHDTQECKLQMESLSHTTDEMIFQWDPDVPLVVDENIELP 210


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 113  RADSAIQPSPSVGGPTSRNERG 48
            ++  A +P P+ GG  +R +RG
Sbjct: 1017 QSQEANKPKPATGGKGTRPKRG 1038


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,656
Number of Sequences: 438
Number of extensions: 5682
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)