Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_B18
(848 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15095.1 68416.m01909 expressed protein 33 0.32
At1g77400.1 68414.m09013 expressed protein 32 0.42
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 30 1.7
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 30 1.7
At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protei... 30 2.2
At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7) c... 29 3.9
At2g39750.1 68415.m04881 dehydration-responsive family protein s... 28 6.8
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop... 28 6.8
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop... 28 6.8
At5g04460.1 68418.m00443 expressed protein 28 9.0
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 28 9.0
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 28 9.0
At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containi... 28 9.0
At3g58460.1 68416.m06516 rhomboid family protein / ubiquitin-ass... 28 9.0
At3g42723.1 68416.m04459 hypothetical protein 28 9.0
At3g10300.3 68416.m01236 calcium-binding EF hand family protein ... 28 9.0
At3g10300.2 68416.m01235 calcium-binding EF hand family protein ... 28 9.0
At3g10300.1 68416.m01234 calcium-binding EF hand family protein ... 28 9.0
>At3g15095.1 68416.m01909 expressed protein
Length = 684
Score = 32.7 bits (71), Expect = 0.32
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Frame = -2
Query: 478 AARPRLQHRPP-RLEPPRSNCSFSGTWFPPV----AKVTTPRIIGSERLRLQVPGR---R 323
++R R RPP L+PPRS+CS+ PP+ A V R+ G+ +++ V R
Sbjct: 590 SSRRRSIDRPPLHLQPPRSSCSYPAA--PPIITAAAAVGEQRVAGANKVQPPVLPRCKSE 647
Query: 322 PGENARRLEGDGAVSTNR 269
P ++A +L + NR
Sbjct: 648 PRKSASKLAPEACFWKNR 665
>At1g77400.1 68414.m09013 expressed protein
Length = 232
Score = 32.3 bits (70), Expect = 0.42
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = -2
Query: 451 PPRLEPPRSNCSFSGTWFPPVAKVTTPRIIGSERLRLQVPGRRPGENARRLEGDGAVS 278
P +L+PPR+ S SG + P + ++PR SER +L P R E+ D +V+
Sbjct: 93 PSKLKPPRTPSSLSGFYSPGPSFRSSPRAF-SERWQLHRPNRIRPESEPEPSSDFSVA 149
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = -2
Query: 559 PLVTVRPFREDRAHRLDGPETGRRVRQAARPRLQHRPPRLEPPRSNCSFSGTWFPP 392
PLV +P + GP G Q +RP RPP PP+ F+G PP
Sbjct: 121 PLVQAQPGLSGPVRGIGGPAPGMMQPQISRPPQIIRPPGQMPPQP--PFAGQGGPP 174
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Frame = +2
Query: 581 QMLTGHGCFGRYLHRVARREPTMECHH-----CDCDEDTVXHTLAYCPAWVEXPR 730
+M G C GR++ R+ P ME HH D D D A P W E R
Sbjct: 264 RMKRGVSCLGRFMPRMVVIPPGMEFHHIVPHDVDADGDDENPQTADPPIWSEIMR 318
>At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protein
similar to SP|Q05022 rRNA biogenesis protein RRP5
{Saccharomyces cerevisiae}; contains Pfam profile
PF00575: S1 RNA binding domain
Length = 1838
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +2
Query: 509 VEAVRPVLAKWANRDQGRLTFRLTQMLTGHGCFGRYLHRVARREPTMECH-HCDCDEDTV 685
V++ P+L+ + + +G +T + HGCF R+ + V P E D D+V
Sbjct: 488 VKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSV 547
Query: 686 XH 691
H
Sbjct: 548 FH 549
>At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7)
contains Pfam profiles: PF05033: Pre-SET motif, PF00856
SET domain; identical to cDNA SUVH7 (SUVH7) GI:13517754
Length = 693
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = -2
Query: 574 PEGETPLVTVRPFREDRAHRLD---GPETGRRVRQAARPRLQHRPPRLEPPR 428
PE PL+T+RP + + D GP TG R RP+ EP +
Sbjct: 97 PEMVIPLITIRPSDDSSNYSCDAGAGPSTGPVKRGRGRPKGSKNSTPTEPKK 148
>At2g39750.1 68415.m04881 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 694
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +2
Query: 470 SRRLADPSAGLRTVEAVRPVLAKWANRDQGRLTFRLTQMLTGHGCFGRYLHRVARREPTM 649
+RRL PS + R + W RD G L + +ML G F V + EP +
Sbjct: 357 TRRLLYPSQAFDLIHCSRCRI-NWT-RDDGILLLEINRMLRAGGYFAWAAQPVYKHEPAL 414
Query: 650 E 652
E
Sbjct: 415 E 415
>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 511
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 792 PSIVAXTVGXDKSGPIXETRTRGCSTHAGQ 703
P IV T+G K G + T+ C+TH Q
Sbjct: 411 PCIVLSTIGISKPGKLEGKSTQQCATHLHQ 440
>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 536
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 792 PSIVAXTVGXDKSGPIXETRTRGCSTHAGQ 703
P IV T+G K G + T+ C+TH Q
Sbjct: 411 PCIVLSTIGISKPGKLEGKSTQQCATHLHQ 440
>At5g04460.1 68418.m00443 expressed protein
Length = 863
Score = 27.9 bits (59), Expect = 9.0
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Frame = -2
Query: 289 GAVSTNRPDCDCTLRASQRHDVSASQGAAPHGGSV*CNRPHHPHVEAAHHRVRPSDVWQE 110
GA +T R D T A + HD + G +V PHV RVR +
Sbjct: 305 GARATPREDQRSTSEADRNHDAAPQVDRVRVGLAVNHEEGQPPHVRRDLRRVRGRQALLD 364
Query: 109 PTQRSSRRHQSGGQ-LLEMSA 50
R+ R Q Q LLE A
Sbjct: 365 LLMRAERERQRELQGLLEHRA 385
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = -2
Query: 559 PLVTVRPFREDRAHRLDGPETGRRVRQAARPRLQHRPPRLEPP 431
PLV +P + GP G Q +RP PP + PP
Sbjct: 120 PLVQAQPGLSGPVRGVGGPAPGMMQPQISRPPQLSAPPIIRPP 162
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = -2
Query: 559 PLVTVRPFREDRAHRLDGPETGRRVRQAARPRLQHRPPRLEPP 431
PLV +P + GP G Q +RP PP + PP
Sbjct: 120 PLVQAQPGLSGPVRGVGGPAPGMMQPQISRPPQLSAPPIIRPP 162
>At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containing
protein / ELM2 domain-containing protein / Myb-like
DNA-binding domain-containing protein similar to
BRG1-binding protein ELD/OSA1 [Homo sapiens]
GI:18568414; contains Pfam profiles PF01388: ARID/BRIGHT
DNA binding domain, PF01448: ELM2 domain, PF00249:
Myb-like DNA-binding domain
Length = 573
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Frame = +3
Query: 21 VSNWTVVGTSA----LISRSWPPD*WRRLDR*VGSCQTSEGLTRWCAASTWGW--CGLLH 182
V WT G + L +R WPP+ LD+ +G+ +G C+ G+ C LH
Sbjct: 384 VDEWTESGVDSDSKWLGTRIWPPENSEALDQTLGNDLVGKGRPDSCSCELSGFVECTRLH 443
Query: 183 YTE 191
E
Sbjct: 444 IAE 446
>At3g58460.1 68416.m06516 rhomboid family protein /
ubiquitin-associated (UBA)/TS-N domain-containing
protein contains Pfam profiles PF01694: Rhomboid family,
PF00627: UBA/TS-N domain
Length = 403
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Frame = +3
Query: 363 IMRGVVTFATGGN---HVPEKEQLERGGSNLG-GLCWRRGLAAWRTRRPVSGPSRRCARS 530
I R TGGN ++P S G WR L++W +R S S +R
Sbjct: 235 IRRPKFIMCTGGNPSSYIPTYSAQNTTSSGFSTGNAWR-SLSSWLPQREASNQSSEDSRF 293
Query: 531 SRNGRTVTKGVSPS 572
GRT++ P+
Sbjct: 294 PGRGRTLSTARDPT 307
>At3g42723.1 68416.m04459 hypothetical protein
Length = 806
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 393 GGNHVPEKEQLERGGSNLGGLCWRRGLAAWRTRRPVSGPSRRCARSSRNGRTVTK 557
G N++PE+E+L+ SNL G + W+ P S +C +R +T K
Sbjct: 283 GENNIPEQERLQIVYSNLEGDIGQWIKHLWKKNSPTSWKEFKC-MMARETKTTMK 336
>At3g10300.3 68416.m01236 calcium-binding EF hand family protein low
similarity to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 335
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 734 GHGXAPPMRGNMRAYXRPCPRRSHSGDTPSSVPS 633
G+G AP G+ Y P P+ S+ S VPS
Sbjct: 126 GYGGAPQQSGHGGGYGAPPPQASYGSPFASLVPS 159
>At3g10300.2 68416.m01235 calcium-binding EF hand family protein low
similarity to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 324
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 734 GHGXAPPMRGNMRAYXRPCPRRSHSGDTPSSVPS 633
G+G AP G+ Y P P+ S+ S VPS
Sbjct: 126 GYGGAPQQSGHGGGYGAPPPQASYGSPFASLVPS 159
>At3g10300.1 68416.m01234 calcium-binding EF hand family protein low
similarity to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 232
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 734 GHGXAPPMRGNMRAYXRPCPRRSHSGDTPSSVPS 633
G+G AP G+ Y P P+ S+ S VPS
Sbjct: 126 GYGGAPQQSGHGGGYGAPPPQASYGSPFASLVPS 159
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,516,658
Number of Sequences: 28952
Number of extensions: 427202
Number of successful extensions: 1500
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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