Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B17
         (851 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.   210   1e-56
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    86   4e-19
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   2.3  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   7.1  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   7.1  

>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score =  210 bits (512), Expect = 1e-56
 Identities = 96/108 (88%), Positives = 99/108 (91%)
 Frame = +3

Query: 507 KSELATCTPRDPGVAGGDVCSSESFNEDIAVFSKQIRQEKPYYIADPEVDSLMVQAIQVL 686
           K ELATCTPR+PGVAGGDVCSSESFNEDIAVFSKQIRQEKPYYIADPEVDSLMVQAIQVL
Sbjct: 95  KCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQIRQEKPYYIADPEVDSLMVQAIQVL 154

Query: 687 RFHLLELEKVHELCDNFCHRYISCLKGXMPIDLXIDXRXXARPPDANG 830
           RFHLLELEKVHELCDNFCHRYISCLKG MPIDL ID R   +PP+  G
Sbjct: 155 RFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDERDGGKPPELTG 202



 Score = 35.5 bits (78), Expect = 5e-04
 Identities = 15/18 (83%), Positives = 15/18 (83%)
 Frame = +1

Query: 433 PLVHKRDKDAIYGHPLVP 486
           P V KRDKDAIYGHPL P
Sbjct: 70  PDVGKRDKDAIYGHPLFP 87



 Score = 27.9 bits (59), Expect = 0.11
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 446 RETKTLFTGIPWFPLLALIFEK 511
           +  K    G P FPLLALIFEK
Sbjct: 74  KRDKDAIYGHPLFPLLALIFEK 95


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 85.8 bits (203), Expect = 4e-19
 Identities = 36/46 (78%), Positives = 38/46 (82%)
 Frame = +3

Query: 693 HLLELEKVHELCDNFCHRYISCLKGXMPIDLXIDXRXXARPPDANG 830
           HLLELEKVHELCDNFCHRYISCLKG MPIDL ID R   +PP+  G
Sbjct: 1   HLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDERDGGKPPELTG 46


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 252 SAGHHERFRSRAQPKT 205
           S G H + RS+ QPKT
Sbjct: 206 SRGRHNQSRSKRQPKT 221



 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -1

Query: 572 RGAHVSARHARVPGGTGR*LTFRRSEPAGGT 480
           R AHV A+     G  G  LTF   E  G T
Sbjct: 76  RLAHVQAQLGAAMGAVGTALTFCLQEEGGTT 106


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 531 PRDPGVAGGDVCSSESFNEDIAVFSK 608
           P   G  GG+VC    + +D +V S+
Sbjct: 511 PTGDGALGGEVCMWGEYVDDSSVESR 536


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 651 PLDPLCNTVSLDVSVC*IPQCLR*KTPRSTRLRPP 547
           P +PL N +  +++   +P+     TPR    RPP
Sbjct: 382 PKNPLINILYANMNSYSVPEPTISTTPRPEWARPP 416


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,510
Number of Sequences: 336
Number of extensions: 4687
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23555563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)