Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B17
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   3.4  
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    26   7.8  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   7.8  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    26   7.8  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +2

Query: 251 EPYTRARAELSWLSLGTTRASTAEVTWRGERCTTS 355
           EPY + ++++S +++ T  ASTA++  R +   T+
Sbjct: 389 EPYLKDQSKISEIAVKTAMASTADILSRSKGSATA 423


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 543 GVAGGDVCSSESFNEDIAVFSKQIRQE 623
           G+ GG+  ++ S  +  ++F KQIRQE
Sbjct: 2   GIFGGNSGNAPSSEDKKSIFMKQIRQE 28


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 120 RVHYDTSELAGRCDSVRSYMCMCARACVVS*VGPVTEI 233
           ++   TS      D+V+ Y+C+     VVS V PV EI
Sbjct: 431 KIRSPTSTPTPLIDAVKQYICLALAKNVVSHVLPVFEI 468


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 552 GGDVCSSESFNEDIAVFSKQIRQEKPYYIADPEVDSLMVQAIQVL 686
           GG + S+           +Q+ ++ P Y+  P+V SL + +I+ L
Sbjct: 344 GGSLISTSDHETGGLTVGRQVSKKYPEYLWKPQVLSLALHSIEYL 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,292,113
Number of Sequences: 5004
Number of extensions: 68772
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)