Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_B17
(851 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF427477-1|AAL65145.1| 527|Caenorhabditis elegans UNC-62 splice... 130 2e-30
AF427476-1|AAL65144.1| 523|Caenorhabditis elegans UNC-62 splice... 130 2e-30
AF427475-1|AAL65143.1| 564|Caenorhabditis elegans UNC-62 splice... 130 2e-30
AF427474-1|AAL65142.1| 560|Caenorhabditis elegans UNC-62 splice... 130 2e-30
AC006692-5|AAV58860.1| 490|Caenorhabditis elegans Uncoordinated... 130 2e-30
AC006692-4|AAF39975.1| 527|Caenorhabditis elegans Uncoordinated... 130 2e-30
AC006692-3|AAO61420.1| 523|Caenorhabditis elegans Uncoordinated... 130 2e-30
AC006692-2|AAF39974.1| 564|Caenorhabditis elegans Uncoordinated... 130 2e-30
AC006692-1|AAO61421.1| 560|Caenorhabditis elegans Uncoordinated... 130 2e-30
Z69791-6|CAL36514.1| 241|Caenorhabditis elegans Hypothetical pr... 36 0.028
Z69791-5|CAL36513.1| 281|Caenorhabditis elegans Hypothetical pr... 36 0.028
DQ118141-1|AAZ23152.1| 241|Caenorhabditis elegans hox cofactor ... 36 0.028
U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter... 35 0.084
M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.ele... 35 0.084
Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical pr... 30 2.4
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 30 2.4
Z79759-8|CAE45097.1| 619|Caenorhabditis elegans Hypothetical pr... 29 4.2
U80954-1|AAB38099.1| 345|Caenorhabditis elegans Hypothetical pr... 29 4.2
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 29 5.5
Z81015-2|CAB02660.1| 411|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical pr... 28 7.3
AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical ... 28 7.3
Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical pr... 25 8.6
Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical p... 28 9.7
Z93389-9|CAB07670.2| 391|Caenorhabditis elegans Hypothetical pr... 28 9.7
U80844-4|AAB37974.1| 192|Caenorhabditis elegans Hypothetical pr... 28 9.7
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 28 9.7
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 28 9.7
>AF427477-1|AAL65145.1| 527|Caenorhabditis elegans UNC-62 splice
variant 1b-7b protein.
Length = 527
Score = 130 bits (313), Expect = 2e-30
Identities = 67/138 (48%), Positives = 91/138 (65%), Gaps = 7/138 (5%)
Frame = +3
Query: 447 ERQRRYLRASPGSPCW-L*SSKSELATCTPRDP---GVAGGDVCSSESFNEDIAVFSKQI 614
+R + + A P P L K ELAT TPRD G DVCSS SF +D+ F +
Sbjct: 57 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 116
Query: 615 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLX 788
++ +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+
Sbjct: 117 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 176
Query: 789 IDXR-XXARPPDANGEPG 839
D R ++PP + G G
Sbjct: 177 GDERASSSQPPMSPGSMG 194
>AF427476-1|AAL65144.1| 523|Caenorhabditis elegans UNC-62 splice
variant 1b-7a protein.
Length = 523
Score = 130 bits (313), Expect = 2e-30
Identities = 67/138 (48%), Positives = 91/138 (65%), Gaps = 7/138 (5%)
Frame = +3
Query: 447 ERQRRYLRASPGSPCW-L*SSKSELATCTPRDP---GVAGGDVCSSESFNEDIAVFSKQI 614
+R + + A P P L K ELAT TPRD G DVCSS SF +D+ F +
Sbjct: 57 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 116
Query: 615 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLX 788
++ +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+
Sbjct: 117 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 176
Query: 789 IDXR-XXARPPDANGEPG 839
D R ++PP + G G
Sbjct: 177 GDERASSSQPPMSPGSMG 194
>AF427475-1|AAL65143.1| 564|Caenorhabditis elegans UNC-62 splice
variant 1a-7b protein.
Length = 564
Score = 130 bits (313), Expect = 2e-30
Identities = 67/138 (48%), Positives = 91/138 (65%), Gaps = 7/138 (5%)
Frame = +3
Query: 447 ERQRRYLRASPGSPCW-L*SSKSELATCTPRDP---GVAGGDVCSSESFNEDIAVFSKQI 614
+R + + A P P L K ELAT TPRD G DVCSS SF +D+ F +
Sbjct: 94 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 153
Query: 615 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLX 788
++ +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+
Sbjct: 154 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 213
Query: 789 IDXR-XXARPPDANGEPG 839
D R ++PP + G G
Sbjct: 214 GDERASSSQPPMSPGSMG 231
>AF427474-1|AAL65142.1| 560|Caenorhabditis elegans UNC-62 splice
variant 1a-7a protein.
Length = 560
Score = 130 bits (313), Expect = 2e-30
Identities = 67/138 (48%), Positives = 91/138 (65%), Gaps = 7/138 (5%)
Frame = +3
Query: 447 ERQRRYLRASPGSPCW-L*SSKSELATCTPRDP---GVAGGDVCSSESFNEDIAVFSKQI 614
+R + + A P P L K ELAT TPRD G DVCSS SF +D+ F +
Sbjct: 94 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 153
Query: 615 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLX 788
++ +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+
Sbjct: 154 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 213
Query: 789 IDXR-XXARPPDANGEPG 839
D R ++PP + G G
Sbjct: 214 GDERASSSQPPMSPGSMG 231
>AC006692-5|AAV58860.1| 490|Caenorhabditis elegans Uncoordinated
protein 62, isoform g protein.
Length = 490
Score = 130 bits (313), Expect = 2e-30
Identities = 67/138 (48%), Positives = 91/138 (65%), Gaps = 7/138 (5%)
Frame = +3
Query: 447 ERQRRYLRASPGSPCW-L*SSKSELATCTPRDP---GVAGGDVCSSESFNEDIAVFSKQI 614
+R + + A P P L K ELAT TPRD G DVCSS SF +D+ F +
Sbjct: 20 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 79
Query: 615 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLX 788
++ +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+
Sbjct: 80 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 139
Query: 789 IDXR-XXARPPDANGEPG 839
D R ++PP + G G
Sbjct: 140 GDERASSSQPPMSPGSMG 157
>AC006692-4|AAF39975.1| 527|Caenorhabditis elegans Uncoordinated
protein 62, isoform b protein.
Length = 527
Score = 130 bits (313), Expect = 2e-30
Identities = 67/138 (48%), Positives = 91/138 (65%), Gaps = 7/138 (5%)
Frame = +3
Query: 447 ERQRRYLRASPGSPCW-L*SSKSELATCTPRDP---GVAGGDVCSSESFNEDIAVFSKQI 614
+R + + A P P L K ELAT TPRD G DVCSS SF +D+ F +
Sbjct: 57 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 116
Query: 615 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLX 788
++ +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+
Sbjct: 117 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 176
Query: 789 IDXR-XXARPPDANGEPG 839
D R ++PP + G G
Sbjct: 177 GDERASSSQPPMSPGSMG 194
>AC006692-3|AAO61420.1| 523|Caenorhabditis elegans Uncoordinated
protein 62, isoform e protein.
Length = 523
Score = 130 bits (313), Expect = 2e-30
Identities = 67/138 (48%), Positives = 91/138 (65%), Gaps = 7/138 (5%)
Frame = +3
Query: 447 ERQRRYLRASPGSPCW-L*SSKSELATCTPRDP---GVAGGDVCSSESFNEDIAVFSKQI 614
+R + + A P P L K ELAT TPRD G DVCSS SF +D+ F +
Sbjct: 57 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 116
Query: 615 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLX 788
++ +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+
Sbjct: 117 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 176
Query: 789 IDXR-XXARPPDANGEPG 839
D R ++PP + G G
Sbjct: 177 GDERASSSQPPMSPGSMG 194
>AC006692-2|AAF39974.1| 564|Caenorhabditis elegans Uncoordinated
protein 62, isoform a protein.
Length = 564
Score = 130 bits (313), Expect = 2e-30
Identities = 67/138 (48%), Positives = 91/138 (65%), Gaps = 7/138 (5%)
Frame = +3
Query: 447 ERQRRYLRASPGSPCW-L*SSKSELATCTPRDP---GVAGGDVCSSESFNEDIAVFSKQI 614
+R + + A P P L K ELAT TPRD G DVCSS SF +D+ F +
Sbjct: 94 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 153
Query: 615 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLX 788
++ +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+
Sbjct: 154 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 213
Query: 789 IDXR-XXARPPDANGEPG 839
D R ++PP + G G
Sbjct: 214 GDERASSSQPPMSPGSMG 231
>AC006692-1|AAO61421.1| 560|Caenorhabditis elegans Uncoordinated
protein 62, isoform f protein.
Length = 560
Score = 130 bits (313), Expect = 2e-30
Identities = 67/138 (48%), Positives = 91/138 (65%), Gaps = 7/138 (5%)
Frame = +3
Query: 447 ERQRRYLRASPGSPCW-L*SSKSELATCTPRDP---GVAGGDVCSSESFNEDIAVFSKQI 614
+R + + A P P L K ELAT TPRD G DVCSS SF +D+ F +
Sbjct: 94 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 153
Query: 615 RQ--EKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLX 788
++ +K YY+ +P++D +M+Q+IQ+LRFHLLELEKVHELCDNFC+RY+ CLKG MP+D+
Sbjct: 154 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 213
Query: 789 IDXR-XXARPPDANGEPG 839
D R ++PP + G G
Sbjct: 214 GDERASSSQPPMSPGSMG 231
>Z69791-6|CAL36514.1| 241|Caenorhabditis elegans Hypothetical
protein F39D8.2b protein.
Length = 241
Score = 36.3 bits (80), Expect = 0.028
Identities = 17/39 (43%), Positives = 27/39 (69%)
Frame = +3
Query: 648 EVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLK 764
EVD LM AI LR ++ELE+V+ L ++F +Y++ L+
Sbjct: 80 EVDELMETAILALRTCMVELERVYSLMESFKAKYLATLR 118
>Z69791-5|CAL36513.1| 281|Caenorhabditis elegans Hypothetical
protein F39D8.2a protein.
Length = 281
Score = 36.3 bits (80), Expect = 0.028
Identities = 17/39 (43%), Positives = 27/39 (69%)
Frame = +3
Query: 648 EVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLK 764
EVD LM AI LR ++ELE+V+ L ++F +Y++ L+
Sbjct: 120 EVDELMETAILALRTCMVELERVYSLMESFKAKYLATLR 158
>DQ118141-1|AAZ23152.1| 241|Caenorhabditis elegans hox cofactor
PSA-3 splice variantbeta protein.
Length = 241
Score = 36.3 bits (80), Expect = 0.028
Identities = 17/39 (43%), Positives = 27/39 (69%)
Frame = +3
Query: 648 EVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLK 764
EVD LM AI LR ++ELE+V+ L ++F +Y++ L+
Sbjct: 80 EVDELMETAILALRTCMVELERVYSLMESFKAKYLATLR 118
>U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 13 protein.
Length = 302
Score = 34.7 bits (76), Expect = 0.084
Identities = 34/114 (29%), Positives = 46/114 (40%)
Frame = -2
Query: 601 NTAMSSLKDSEEHTSPPATPGSRGVQVASSLFEDQSQQGEPGDARK*RLCLSCGLVVPRG 422
N + K EE T PP P +G A L DQ +GE G + + G P+G
Sbjct: 131 NPGKAPQKPCEEITPPPCKPCPQGPPGAPGLPGDQGDKGEAGQPGQPGSDAAPGEQGPKG 190
Query: 421 GRERVLPAGGSALEPGGDGSACARGTSLPPPCNLRRGGSRRT*AEP*KLGPSPG 260
G+ +PG G+ G LP C + G + EP +GP PG
Sbjct: 191 -------PNGAPGKPGAPGAPGDEG--LPAVCEPVQKGEPGSTGEPGPVGP-PG 234
>M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein (
C.elegans collagen (dpy-13) gene, complete cds. ).
Length = 302
Score = 34.7 bits (76), Expect = 0.084
Identities = 34/114 (29%), Positives = 46/114 (40%)
Frame = -2
Query: 601 NTAMSSLKDSEEHTSPPATPGSRGVQVASSLFEDQSQQGEPGDARK*RLCLSCGLVVPRG 422
N + K EE T PP P +G A L DQ +GE G + + G P+G
Sbjct: 131 NPGKAPQKPCEEITPPPCKPCPQGPPGAPGLPGDQGDKGEAGQPGQPGSDAAPGEQGPKG 190
Query: 421 GRERVLPAGGSALEPGGDGSACARGTSLPPPCNLRRGGSRRT*AEP*KLGPSPG 260
G+ +PG G+ G LP C + G + EP +GP PG
Sbjct: 191 -------PNGAPGKPGAPGAPGDEG--LPAVCEPVQKGEPGSTGEPGPVGP-PG 234
>Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical
protein F15A2.1 protein.
Length = 291
Score = 32.3 bits (70), Expect = 0.45
Identities = 35/115 (30%), Positives = 40/115 (34%), Gaps = 1/115 (0%)
Frame = -2
Query: 556 PPATPGSRGVQVASSLFEDQSQQGEPGDARK*RLCLSCGLVVPRGGRERVLPA-GGSALE 380
P PG+RG Q A L G+PG K L +P GG A
Sbjct: 101 PDGPPGARGPQGAPGLPGAPGVDGKPGVDGK-------SLTYVHAAEADCIPCPGGEAGP 153
Query: 379 PGGDGSACARGTSLPPPCNLRRGGSRRT*AEP*KLGPSPGVGLRWPPRTISVTGP 215
PG DG RG + PP N G R P GP+ G P GP
Sbjct: 154 PGPDGEPGVRGPNGPPGPNGHPGQPGR----PGPAGPAGPEGKDGPVGPHGPAGP 204
>Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical
protein ZC373.7 protein.
Length = 297
Score = 29.9 bits (64), Expect = 2.4
Identities = 27/80 (33%), Positives = 31/80 (38%)
Frame = -2
Query: 574 SEEHTSPPATPGSRGVQVASSLFEDQSQQGEPGDARK*RLCLSCGLVVPRGGRERVLPAG 395
S H P PGS+G A Q G PG + R S G G PAG
Sbjct: 177 SAGHPGAPGQPGSKGNNGAPGAAGGPGQPGRPGKDGQ-RGKGSAGAPGAPGKAGPAGPAG 235
Query: 394 GSALEPGGDGSACARGTSLP 335
G PG +GSA G + P
Sbjct: 236 G----PGNNGSAGTPGPAGP 251
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 29.9 bits (64), Expect = 2.4
Identities = 26/81 (32%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Frame = -2
Query: 556 PPATPGSRGVQVASSLFEDQSQQGEPGDA---RK*RLCLSC--GLVVPRGGRERVLPAGG 392
PP PG G Q G+ G A + C++C G P G PAG
Sbjct: 138 PPGPPGEAGTDGEPGQAGQDGQPGQAGQADSGSSGQACITCPAGPPGPPGPDGNAGPAGA 197
Query: 391 SALEPGGDGSACARGTSLPPP 329
+ PG DG A S PPP
Sbjct: 198 PGV-PGPDGDA----GSPPPP 213
>Z79759-8|CAE45097.1| 619|Caenorhabditis elegans Hypothetical
protein ZK858.6 protein.
Length = 619
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 561 VCSSESFNEDIAVFSKQIRQEKPYYIADPEVDSLMVQAI 677
VCS++ E++A+F ++IRQE Y A VD+L V +
Sbjct: 103 VCSNKLSKENVALFKERIRQE---YSAHLIVDNLPVATV 138
>U80954-1|AAB38099.1| 345|Caenorhabditis elegans Hypothetical
protein T07F8.4 protein.
Length = 345
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -2
Query: 706 NSKR*NRSTCIAC-TINESTSGSAM*YGFS*RICLLNTAMSSLKDSEEHTSPPATPGSRG 530
NS N T IA + ES+S +A + + I + +MS D ++ +PP P R
Sbjct: 70 NSSANNEDTEIAEENVGESSSAAAEPHDST--IFDMGNSMSGFDDDDDDYAPPPDPWKRS 127
Query: 529 VQVASSLFE 503
++V LF+
Sbjct: 128 IRVDPVLFQ 136
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 28.7 bits (61), Expect = 5.5
Identities = 35/106 (33%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Frame = -2
Query: 556 PPATPGSRGVQVASSLFEDQSQQGEPGD--ARK*RL---CLSC--GLVVPRGGRERVLPA 398
PP TPG +G Q S D + G G+ A L C+ C G PRG V PA
Sbjct: 103 PPGTPGEQGPQGESGPDGDDGKPGLAGEVVAIVHDLPGGCIQCPPGRPGPRGPPGEVGPA 162
Query: 397 GGSALEPGGDGSACARGTSLPP--PCNLRRGGSRRT*AEP*KLGPS 266
G P GD +G PP P GG P + GP+
Sbjct: 163 G-----PSGDNG--RKGPPGPPGGPGGPGEGGDGGRPGNPGRPGPA 201
>Z81015-2|CAB02660.1| 411|Caenorhabditis elegans Hypothetical
protein C11E4.3 protein.
Length = 411
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 164 CPIIYVYVCTCLCGVL 211
C YVYVC C+C VL
Sbjct: 376 CFRFYVYVCVCVCAVL 391
>Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.6 protein.
Length = 401
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 582 NEDIAVFSKQIRQEKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHEL 725
N D+AVF IR+ YYI S ++ I ++ L +K+ +L
Sbjct: 246 NMDLAVFEITIRRNPLYYIYMIVFPSFVINGISIVGIFLKSADKMSKL 293
>Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.5 protein.
Length = 401
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 582 NEDIAVFSKQIRQEKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHEL 725
N D+AVF IR+ YYI S ++ I ++ L +K+ +L
Sbjct: 246 NMDLAVFEITIRRNPLYYIYMIVFPSFVINGISIVGIFLKSADKMSKL 293
>AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical
protein T07A9.14 protein.
Length = 204
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 30 RRASRFTAPRSATPRPEPPTNT 95
+RA R++ P S+TP P PP ++
Sbjct: 163 KRAPRYSPPPSSTPTPTPPPSS 184
>Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical
protein ZK1010.7 protein.
Length = 298
Score = 25.4 bits (53), Expect(2) = 8.6
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -2
Query: 553 PATPGSRGVQVASSLFEDQSQQGEPG 476
P PG+ G S L DQ Q G PG
Sbjct: 214 PGDPGAPGEPGPSGLPGDQGQAGRPG 239
Score = 21.0 bits (42), Expect(2) = 8.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -2
Query: 394 GSALEPGGDGSACARGTSLPP 332
G A PG DG+ +G PP
Sbjct: 233 GQAGRPGSDGAPGPQGPPGPP 253
>Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical
protein Y69H2.12 protein.
Length = 528
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +2
Query: 182 YVCTCLCGVLGW-ARDRNRSWWPAEPYTRARAELSWLSLGTTRASTAEVTWRGERCTTST 358
Y C+CL G + NR + A+P + + + T T + W GE C T
Sbjct: 420 YTCSCLSQYFGTNCEEINRCNY-ADPCVNGDCQTTVDGITTNYTCTCDSGWTGENCDTMI 478
Query: 359 G*PIP 373
IP
Sbjct: 479 DYCIP 483
>Z93389-9|CAB07670.2| 391|Caenorhabditis elegans Hypothetical
protein T13F3.2 protein.
Length = 391
Score = 27.9 bits (59), Expect = 9.7
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +3
Query: 663 MVQAIQVLRFHLLELEKVHELCDNFCHRY 749
M+ ++ L+ HL+ + K+ + DNFC+ +
Sbjct: 360 MMAIVKSLQKHLMNIHKIIDYADNFCNLF 388
>U80844-4|AAB37974.1| 192|Caenorhabditis elegans Hypothetical
protein C07D8.2 protein.
Length = 192
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 543 QGPGGYRSLAHFSKIRASRGNQGMPVNS 460
Q PGGYRS H S+ A R N P+++
Sbjct: 162 QTPGGYRSYCHKSESNAIRVNFTRPLST 189
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 27.9 bits (59), Expect = 9.7
Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Frame = -2
Query: 553 PATPGSRGVQVASSLFEDQSQQGEPGDARK*RLCLSCGLVVPRGGRERVLPAG--GSALE 380
P TPG GV S + G PG+A S G G + P G G +
Sbjct: 198 PGTPGEPGVPAQSEPLIP-GEPGPPGEAGPQGPPGSPGQPGADGSPGQPGPKGPNGPDGQ 256
Query: 379 PGGDGSACARGTSLPPPCNLRRG 311
PG DG+ A G + PP RG
Sbjct: 257 PGADGNPGAPGPAGPPGSPGERG 279
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 27.9 bits (59), Expect = 9.7
Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Frame = -2
Query: 553 PATPGSRGVQVASSLFEDQSQQGEPGDARK*RLCLSCGLVVPRGGRERVLPAG--GSALE 380
P TPG GV S + G PG+A S G G + P G G +
Sbjct: 198 PGTPGEPGVPAQSEPLIP-GEPGPPGEAGPQGPPGSPGQPGADGSPGQPGPKGPNGPDGQ 256
Query: 379 PGGDGSACARGTSLPPPCNLRRG 311
PG DG+ A G + PP RG
Sbjct: 257 PGADGNPGAPGPAGPPGSPGERG 279
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,618,155
Number of Sequences: 27780
Number of extensions: 482349
Number of successful extensions: 1511
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1479
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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