Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B17
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    27   0.22 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    25   0.67 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.67 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   2.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   2.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   2.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 207 TPHKHVHTYTYMIGHCHSGPLAH 139
           TPH H H++     H HS PLAH
Sbjct: 429 TPHHH-HSHAATPHHQHSTPLAH 450



 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 207 TPHKHVHTYTYMIGHCHSGPLAH*CHNA 124
           TP  H HT  +   H H+ P  H  H A
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHHHSHAA 438


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 226 PKSFVVASGALHPGSGRAFMAQPR 297
           P S +VASG  H G  ++  AQP+
Sbjct: 919 PGSGIVASGQQHAGGWQSIYAQPQ 942


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
 Frame = -3

Query: 255 GSAGHHERFRSRAQPKT--PHKHVHTYTYMIGHCH 157
           GS+ HH+       P    PH H H  T  + H H
Sbjct: 331 GSSPHHQHGNHTMGPTMGPPHHHHHHQTQSLQHLH 365


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 586 SLKDSEEHTSPPATPGSRG 530
           S+K + E+  PP  PG  G
Sbjct: 324 SMKTARENPGPPGVPGDHG 342


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 586 SLKDSEEHTSPPATPGSRG 530
           S+K + E+  PP  PG  G
Sbjct: 324 SMKTARENPGPPGVPGDHG 342


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 586 SLKDSEEHTSPPATPGSRG 530
           S+K + E+  PP  PG  G
Sbjct: 263 SMKTARENPGPPGVPGDHG 281


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +2

Query: 170 IIYVYVCTCLCGVLGWARDRNRSWWPAEPYTRARAELSWLSLGTTRASTAE 322
           + + Y+ TCL  ++ W      S+W       AR  L   SL T     A+
Sbjct: 248 LFHTYIPTCLIVIMSWV-----SFWIKPEAAPARVTLGVTSLLTLSTQHAK 293


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 299 TTRASTAEVTWRGERCTTSTG*PIPTWLQCTT 394
           T   + + +TW G   T   G  IPT L+  T
Sbjct: 387 TLSVNESNITWPGRLQTKPEGFMIPTHLKVLT 418


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 583  LKDSEEHTSPPATPGSRGVQVAS 515
            LK  +  TSP   PG  G+++ S
Sbjct: 1126 LKPQKPFTSPGGIPGPNGIKMPS 1148



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 306 EPPRRRLHGGGSDVPRAQA 362
           +PP ++LH   S  P+AQA
Sbjct: 808 QPPHQQLHHHQSTHPQAQA 826



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -2

Query: 448  SCGLVVP-RGGRERVLPAGGSALEPGGDGSACARGTSLPPPCNLRRGGSR 302
            S G  VP R  R   +    S  + G +     R TS P P ++ R GSR
Sbjct: 1360 SGGRPVPERPERVPTVDLSPSPSDRGRNDDGSDRLTSPPTPLSISRAGSR 1409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,590
Number of Sequences: 438
Number of extensions: 6288
Number of successful extensions: 27
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)