Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B17
         (851 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51745.1 68414.m05831 expressed protein                             29   3.9  
At5g13650.2 68418.m01585 elongation factor family protein contai...    29   5.2  
At5g12050.1 68418.m01409 expressed protein                             28   9.1  
At3g03140.1 68416.m00310 expressed protein                             28   9.1  

>At1g51745.1 68414.m05831 expressed protein
          Length = 635

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 203 GVLGWARDRNRSWWPAE 253
           G L W R RN SWWP +
Sbjct: 17  GRLVWVRRRNGSWWPGQ 33


>At5g13650.2 68418.m01585 elongation factor family protein contains
           Pfam profiles: PF00009 elongation factor Tu GTP binding
           domain,PF00679 elongation factor G C-terminus,  PF03144
           elongation factor Tu domain 2
          Length = 676

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 433 PLVHKRDKDAIYGHPLVPPAGSDLRKVS*RPVP-PGTLAWRAETCAPRSLSTK 588
           PL+HK+    +     + P G  LR  S RP+P P T +    T  P S+  K
Sbjct: 21  PLLHKQQVLGVSFASALKPGGGALRFPSRRPLPRPITCSASPSTAEPASVEVK 73


>At5g12050.1 68418.m01409 expressed protein
          Length = 362

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 586 SLKDSEEHTSP--PATPGSRGVQVASSLFEDQSQQ 488
           S+K S     P  PA+PG R V   +SLF + S+Q
Sbjct: 148 SVKSSGNQKKPKTPASPGGRIVNFLNSLFSNNSKQ 182


>At3g03140.1 68416.m00310 expressed protein
          Length = 769

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 203 GVLGWARDRNRSWWP 247
           G + W R RN SWWP
Sbjct: 14  GSIVWVRRRNGSWWP 28


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,757,953
Number of Sequences: 28952
Number of extensions: 440524
Number of successful extensions: 1206
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)