Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B16
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    29   1.1  
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    26   6.0  

>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 553 TLDSSWLSGIQLCRWNFNSFLQRFRKHSRTDSLRSSLRKLLIHII 419
           T DS    G+ + +  F  F Q+F K    D L+SSL + ++ ++
Sbjct: 558 TADSYIAEGLDIFKAAFKEFTQKFGKSEVRDLLKSSLNEKVMDLL 602


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 563 PSQMLKHAVVNLINYQDDADLATRAIPELIK 655
           PS+MLK  V+  +NY++ + +   AIP L++
Sbjct: 257 PSEMLK--VLKKVNYKEPSSIQRAAIPVLLQ 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,292,387
Number of Sequences: 5004
Number of extensions: 63254
Number of successful extensions: 193
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)