Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B16
         (857 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1562 - 27738369-27738568,27738767-27738962,27739079-277392...    33   0.22 
03_06_0195 + 32256771-32258792                                         32   0.51 
08_01_0380 - 3376475-3377116,3377722-3377919,3378381-3378556,337...    31   1.6  
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508...    29   3.6  
10_01_0063 - 827069-827089,827444-829384,830582-830593                 28   8.3  
08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078...    28   8.3  

>07_03_1562 - 27738369-27738568,27738767-27738962,27739079-27739230,
            27739775-27739832,27739923-27740038,27740117-27740237,
            27740348-27740635,27740817-27740987,27741091-27741741,
            27742515-27742676,27742764-27743904,27743992-27744152,
            27744239-27744564,27745678-27745825
          Length = 1296

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = +2

Query: 521  LDPAQPTAVQRLAEPSQMLKHAVVNLINYQ--DDADLATRAIPELIKLLNDEDQVXVSQA 694
            L+P       RL +PS  ++   V +I++   +D       I E+   + DED+   S A
Sbjct: 980  LEPWTEHIYARLRDPSASVRKNTVLVISHLILNDMMKVKGFINEMAVRIEDEDERISSLA 1039

Query: 695  AMMVHQLSKKEASRXAIMNSP 757
             +  H+LSKK  S   + ++P
Sbjct: 1040 KLFFHELSKKGMSSKCVGSNP 1060


>03_06_0195 + 32256771-32258792
          Length = 673

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = +1

Query: 262 QQNSYLVDSGINSGAATQVPSLTGKED--DEMEGDQLMFDLDQGFAQ 396
           + N+  VDS I+  AAT+V + +G+ED  DE +GD   FD + G  +
Sbjct: 120 ESNNDHVDSNID--AATEVTTFSGEEDLDDETDGDIECFDEEDGICE 164


>08_01_0380 -
           3376475-3377116,3377722-3377919,3378381-3378556,
           3378681-3379703,3380476-3380593
          Length = 718

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 425 MNQQLSQTRSQRVRAAMFPETLEEGIEIPSTQLDPAQPT 541
           M + +S++    V+ A FP+ LE G+EI S +  P   T
Sbjct: 174 MTKDVSKSNEDAVKNAPFPQILEVGMEICSKEASPVSHT 212


>04_03_0496 +
           16549333-16549465,16549620-16550020,16550412-16550880,
           16552038-16552076,16553151-16553272,16553531-16553677,
           16554097-16554186,16554274-16554398,16554567-16554772,
           16554951-16555075,16555528-16555722,16556295-16556337,
           16556762-16557267,16558198-16558570,16559772-16560062,
           16560132-16561101,16561196-16561892,16562378-16562658,
           16562731-16563400,16563860-16564034,16565103-16565659
          Length = 2204

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +2

Query: 413 QVDDMNQQLSQTR--SQRVRAAMFPETLEEGIEIP-STQLDPAQPTAVQRLAEPS 568
           QV+    Q+ Q    S+  +    P T +  ++IP S  L  AQP++V+RL EPS
Sbjct: 629 QVEKTRIQVQQLHNFSREQQGMPGPTTAKADLDIPESVGLYAAQPSSVKRLIEPS 683


>10_01_0063 - 827069-827089,827444-829384,830582-830593
          Length = 657

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
 Frame = +2

Query: 392 LRXFTQEQVDDMNQQLSQTRSQRVRAAMFPETLEE----GIEIPSTQLDPAQPTAVQRLA 559
           +R FTQE+++++ Q  S   S      ++  TLE+     + I S  L+  +   +    
Sbjct: 365 MRIFTQEELNEITQNYSCLLSGGTSGKVYKGTLEDNTVVAVRIFSEALEGFEEAFINGGM 424

Query: 560 EPSQMLKHAVVNLINYQDDAD 622
             SQ++   ++ L+ Y  +AD
Sbjct: 425 ILSQIVHKNIIRLLGYCLNAD 445


>08_02_1332 +
           26207164-26207257,26207454-26207530,26207771-26207841,
           26208448-26208502,26209066-26209187,26209272-26209353,
           26210070-26210160,26210759-26210982,26211294-26211413,
           26211523-26211705
          Length = 372

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +2

Query: 476 FPETLEEGIEIPSTQLDPAQPTA--VQRLAEPSQMLKHAVVNLI-NYQDDADLATRAIPE 646
           FPE L    ++ +T L    P    V+    P Q L+  + NL  NY+DD    TRA   
Sbjct: 226 FPEHLYFSCDLETTFLTFLAPQIKPVEPAVSPEQ-LRDCLRNLKKNYKDDTTKVTRAFQI 284

Query: 647 LIKLL 661
           L+K++
Sbjct: 285 LLKII 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,658,125
Number of Sequences: 37544
Number of extensions: 457507
Number of successful extensions: 1207
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)