Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B16
         (857 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31372| Best HMM Match : Arm (HMM E-Value=0)                        185   4e-47
SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.52 
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.69 
SB_7780| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.8  
SB_13363| Best HMM Match : COG2 (HMM E-Value=0.081)                    29   4.8  
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_31372| Best HMM Match : Arm (HMM E-Value=0)
          Length = 656

 Score =  185 bits (451), Expect = 4e-47
 Identities = 91/120 (75%), Positives = 99/120 (82%)
 Frame = +2

Query: 401 FTQEQVDDMNQQLSQTRSQRVRAAMFPETLEEGIEIPSTQLDPAQPTAVQRLAEPSQMLK 580
           F   ++  MN+Q   TRSQR+R AMFPETLEEG +IPSTQ D    TAVQRLAEPS MLK
Sbjct: 60  FNDHEMQAMNEQFVSTRSQRIRQAMFPETLEEGAQIPSTQFDSTSSTAVQRLAEPSLMLK 119

Query: 581 HAVVNLINYQDDADLATRAIPELIKLLNDEDQVXVSQAAMMVHQLSKKEASRXAIMNSPQ 760
            AVVNLINYQDDADLATRAIPEL KLLND+DQV V QAAMMVHQLS+K+ASR AIMNSPQ
Sbjct: 120 QAVVNLINYQDDADLATRAIPELAKLLNDDDQVVVGQAAMMVHQLSRKDASRHAIMNSPQ 179



 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +1

Query: 235 NKEQQTLMWQQNSYLVDSGINSGAATQVPSLTGKEDDE-MEGDQLMFDLDQGF 390
           NK+ QT MW Q  +  DSGI SGA T   S+ G EDD+ M+   + F+ +Q F
Sbjct: 10  NKDAQTAMWHQTYH--DSGIMSGATTTAHSVKGDEDDDYMKTTHMSFEWEQSF 60



 Score = 35.5 bits (78), Expect = 0.056
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = +3

Query: 765 VAALXXAISXSNDLXTTXGAVGXXHNLSHH 854
           VAAL  A++  +D+ TT  A G  HNLSHH
Sbjct: 181 VAALVRALNNMSDVETTRCAAGTLHNLSHH 210


>SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1161

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 25/113 (22%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
 Frame = +2

Query: 407 QEQVDDMNQQLSQTRSQRVRAAMFPETLEEGIEIPSTQLDPAQPTAVQRLAEPSQMLKHA 586
           Q QV++M+ + ++ +  RVR+  + + LEE IE      +  Q    ++ +  ++  + A
Sbjct: 638 QAQVEEMSSEANREKKLRVRSDQYSKQLEEEIEYLKELSEKIQEIETKKASLENECWRKA 697

Query: 587 --VVNLINYQDDADLA---TRAIPELIKLLNDEDQVXVSQAAMMVHQLSKKEA 730
             V++L + ++  ++     R      KLL +E++   S+   +   L K  A
Sbjct: 698 KIVLSLFSQREQQEMTLEMNRKNERERKLLREENKKLQSEIDKLSESLEKSVA 750


>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1448

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 20  LYESSDGGSDIVHLICKNCLKVVKTVNLFGLHGQGDGCIVASSKS 154
           +YE+SD  S+   L C+ CLK+   +NL   H   D C  + S++
Sbjct: 120 VYENSDSQSESRPLRCQRCLKIFAQLNLLSAHALLD-CTDSQSQN 163


>SB_7780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
 Frame = +3

Query: 105  LACTAKGTGASSHRLNHELSNSIIAKSHNVAQQLCCF*CANGTKQRAADIDVAAKLLFSG 284
            LA T   +GAS    ++++  S++A+  N+A +LC        + +  DI    +L F G
Sbjct: 887  LAMTGSASGASVVFHSNDVPVSLLAEGVNLASKLCAKFQTTSPRLQNQDISSIKELFFQG 946

Query: 285  -----LWNQLWS 305
                  +N++W+
Sbjct: 947  GLFASFFNRVWN 958


>SB_13363| Best HMM Match : COG2 (HMM E-Value=0.081)
          Length = 411

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +2

Query: 554 LAEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDEDQVXVSQAAMMVHQLSKKEAS 733
           L E  + LKHA++ LIN QD AD    +   +I+   D   V + +      QL +K+  
Sbjct: 51  LDEYLKALKHALIELIN-QDYADFVNLSSNLMIRTELDNTIVSIEEKLDQRSQLRQKKVC 109

Query: 734 RXAIMN 751
              ++N
Sbjct: 110 MQHLLN 115


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +2

Query: 392  LRXFTQEQVDDMNQQLSQTRSQRVRAAMFPETLEEGIEIPSTQLDPAQPTAVQRLAEPSQ 571
            L+   + QVDD+N Q S    +        E +EE +++ + +  P      + L+E ++
Sbjct: 1428 LKDDLESQVDDLNFQKSSLEKENDLLRKKMEIVEEEMKLTAIENKPLDAVDAKPLSEENE 1487

Query: 572  MLK 580
             LK
Sbjct: 1488 ALK 1490


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,229,704
Number of Sequences: 59808
Number of extensions: 515740
Number of successful extensions: 1837
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1834
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)