Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B16
         (857 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28290.2 68415.m03434 chromatin remodeling protein, putative ...    33   0.32 
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ...    33   0.32 
At2g40730.1 68415.m05024 HEAT repeat-containing protein contains...    30   2.3  
At5g50390.1 68418.m06241 pentatricopeptide (PPR) repeat-containi...    29   4.0  
At3g49560.1 68416.m05416 mitochondrial import inner membrane tra...    29   5.2  
At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putativ...    28   6.9  
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t...    28   6.9  
At1g02080.1 68414.m00130 transcriptional regulator-related conta...    28   6.9  

>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
            similar to transcriptional activator HBRM [Homo sapiens]
            GI:414117; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain; identical to cDNA putative chromatin
            remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3529

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 175  SQSRTMSHSSYVASDVPMAPNKEQ-QTLMWQQNSYLVDSGINSGAATQVPSLTGKEDD 345
            SQS  +   S +  DVP  P+    + +   QN+  +D GI SG   Q  S T  ED+
Sbjct: 2682 SQSEEIQSPSILPDDVPGQPDDGNCEKMDTMQNNTSIDIGITSGKTCQPSSSTQPEDE 2739


>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
            similar to transcriptional activator HBRM [Homo sapiens]
            GI:414117; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain; identical to cDNA putative chromatin
            remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3574

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 175  SQSRTMSHSSYVASDVPMAPNKEQ-QTLMWQQNSYLVDSGINSGAATQVPSLTGKEDD 345
            SQS  +   S +  DVP  P+    + +   QN+  +D GI SG   Q  S T  ED+
Sbjct: 2682 SQSEEIQSPSILPDDVPGQPDDGNCEKMDTMQNNTSIDIGITSGKTCQPSSSTQPEDE 2739


>At2g40730.1 68415.m05024 HEAT repeat-containing protein contains
           INTERPRO:IPR000357 HEAT repeat
          Length = 798

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +2

Query: 611 DDADLATRAIPELIKLLNDEDQVXVSQAAMMVHQLSKKEASRXAIMNSPQXGGCVGS 781
           DD ++ATR +P ++ L  D+D    S+A   V Q  +         N+ + G   G+
Sbjct: 515 DDTEIATRILPNIVVLTIDQDSDVRSKAFQAVEQFLQILKQNYEKTNAGEIGASGGA 571


>At5g50390.1 68418.m06241 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 701

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 56  HLICKNCLKVVKTVNLFGLHGQGDGCIVASSKS*VIKFHHRKVAQC 193
           H ICKNC KVV+ ++L      G   +V  +     +FHH K  +C
Sbjct: 658 HRICKNCHKVVEFISLV----TGREMVVRDAS----RFHHFKEGKC 695


>At3g49560.1 68416.m05416 mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein
           contains Pfam PF02466: Mitochondrial import inner
           membrane translocase subunit Tim17
          Length = 261

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
 Frame = +1

Query: 76  FKSRENS*SVWLARPRGRVHRRIV*IMSY---QIPSSQSRTMSHSSYVASDVP--MAPNK 240
           FK  E +   WL++    V   +V  MS            T+S     A   P  +A  K
Sbjct: 39  FKEVETNFKTWLSKQSIPVEAAVVSTMSGVQGAFIGGLMGTLSPEMPQAGVDPQAIASMK 98

Query: 241 EQQTLM---W-QQNSYLVDSGINSGAATQVPSLTGKEDDEMEGDQLMFDLDQGFAQGIHS 408
           + Q L+   W Q  ++   +G+N+G A+ +  + GKED E     ++  L  GFA  + S
Sbjct: 99  QAQALVGGPWVQARNFAAITGVNAGIASVMKRIRGKEDIE---SAVVAALGSGFAYSLVS 155

Query: 409 R 411
           +
Sbjct: 156 Q 156


>At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putative
           (UBP23) identical to GI:11993486
          Length = 859

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 524 DPAQPTAVQRLAEPSQMLKHAVVNLINYQDDADLATRAIPELIKLLNDED 673
           D  QP     L+E SQ  K    +++  ++  ++ TR +PE +    DE+
Sbjct: 733 DQQQPVGSSDLSEASQNAKRKRESVLLQKEAVNILTRGVPETVVAKWDEE 782


>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893
          Length = 687

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 548 QRLAEPSQMLKHAVVN-LINYQDDADLATRAIPELIKLLNDEDQV 679
           Q LAE    L   +++ LI  Q  ADL  +  P+L++LL D D V
Sbjct: 218 QDLAEGRPHLVLGLISQLIKIQVLADLNLKKTPQLVELLEDSDDV 262


>At1g02080.1 68414.m00130 transcriptional regulator-related contains
           Pfam PF04054: CCR4-Not complex component, Not1; contains
           TIGRFAM TIGR01612: reticulocyte binding protein; similar
           to General negative regulator of transcription subunit 1
           (SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
           gb|T44328 and gb|AA395265
          Length = 2378

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
 Frame = +2

Query: 353 KVTNLCLTLIRVLLRXF--TQEQVDDMNQQLSQTRSQRVRAAMFPETLEEGIEIPSTQLD 526
           K++NL  TL+   L  F  TQE VDD+   L+ + S+ +  A+     E  ++  +T  +
Sbjct: 76  KLSNLA-TLLPHALNDFELTQESVDDLTTTLNFSISENIGFALALTDFER-LDAKTTGRN 133

Query: 527 PAQPTAVQRLAEPSQMLK----HAVVNLINYQDDADLATRAIPELIKLLNDEDQVXVSQA 694
                  Q  A   Q+L     H+V++ +   +D  +   +  + +      D    +  
Sbjct: 134 LLLAQIEQLCANTGQILSSELIHSVLSFLRKSEDLSMHLDSFLQFLSSAQPRDDFSFALT 193

Query: 695 AMMVHQLSKKEASR 736
            M+  Q+ +    R
Sbjct: 194 PMLAQQVHEAPVFR 207


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,701,018
Number of Sequences: 28952
Number of extensions: 351417
Number of successful extensions: 896
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)