Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B14
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    28   1.9  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    27   2.6  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.6  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    26   7.8  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    26   7.8  

>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +1

Query: 469 TSAVSQGDVVACVLLLYNPLTGCPVHVHAYRCDSEHTAEMLYTHLQALIDRPENQKKFAD 648
           TS V++G  V  + L+ N    CP H+  Y      T    +T +      PE +K   D
Sbjct: 725 TSVVARGLDVKSLQLVVN--YDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVD 782

Query: 649 IERKLQM 669
           I + L+M
Sbjct: 783 IAKALKM 789


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +2

Query: 131  INTTLIGLAFEYKLLESFGIDKSL 202
            INTT +G    Y+LLESFG +K L
Sbjct: 1098 INTT-VGWQLFYRLLESFGHEKKL 1120


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -1

Query: 745 PESXFXETSLPSDDPEXSCWSEEPR 671
           P++   ++ LPS+DP+ S W+++ R
Sbjct: 192 PDNDTDDSILPSNDPQLSKWNQDSR 216


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 685 SEEPRAFEACVRYRRISFD 629
           +E+P +FE C+ + R+ FD
Sbjct: 657 TEKPLSFEECIMWARLQFD 675


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 480 HGTRDAAVRYEMLDRLLFSLGCYILYYFQAFM 385
           H T+D A+    L  L+F  G  I+YY Q  M
Sbjct: 314 HETKDIALALNALTALIFMDGIPIIYYGQEQM 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,601
Number of Sequences: 5004
Number of extensions: 57829
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)