Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B14
         (853 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34802-4|CAA84335.4|  365|Caenorhabditis elegans Hypothetical pr...    81   7e-16
U80023-5|AAG24040.1|  315|Caenorhabditis elegans Serpentine rece...    29   5.5  
U80023-6|AAG24045.1|  306|Caenorhabditis elegans Serpentine rece...    28   9.7  

>Z34802-4|CAA84335.4|  365|Caenorhabditis elegans Hypothetical
           protein M88.4 protein.
          Length = 365

 Score = 81.4 bits (192), Expect = 7e-16
 Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 9/112 (8%)
 Frame = +1

Query: 373 LKVSHKGLKIIQNVTA-----KGKQQTIKHFIPHGSITSAVSQ----GDVVACVLLLYNP 525
           +++S KGLK+IQ+V A     K K Q +K  I    IT +++      DVV  V+L+ NP
Sbjct: 54  VQISSKGLKLIQSVPAMSRSGKVKMQLVKFQIAANCITYSITGKAPFDDVVGVVMLVLNP 113

Query: 526 LTGCPVHVHAYRCDSEHTAEMLYTHLQALIDRPENQKKFADIERKLQMRGAL 681
               P+HVH YRCDS  TA+++  +LQ L+ RP+ Q+   D+E +L + G L
Sbjct: 114 EMQSPMHVHCYRCDSAETAQIMLANLQLLLSRPDVQRSINDLEHRLFLSGLL 165


>U80023-5|AAG24040.1|  315|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 31 protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 279 LFRDCCVFVRIRSPALVANSDLEFFHLQLLIIEGFT*RPENNTECNSQGKTA 434
           + R C   + I++   +  S + FF +Q +I +G T        C + GKTA
Sbjct: 32  IMRPCSAIITIKTATDILTSIMSFFVMQRIITDGSTILVIPTGPCINFGKTA 83


>U80023-6|AAG24045.1|  306|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 29 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 279 LFRDCCVFVRIRSPALVANSDLEFFHLQLLIIEGFT*RPENNTECNSQGKTA 434
           + R C   + I++   +  S + FF +Q +I +G +        C + GKTA
Sbjct: 32  IMRSCSAIITIKTSTDILASVMNFFVIQRIITDGSSILVIPTGPCTNFGKTA 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,921,699
Number of Sequences: 27780
Number of extensions: 341442
Number of successful extensions: 796
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)