Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B14
         (853 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27210.1 68418.m03246 expressed protein weak similarity to se...    28   6.9  
At3g05010.1 68416.m00544 transmembrane protein, putative similar...    28   6.9  

>At5g27210.1 68418.m03246 expressed protein weak similarity to seven
           transmembrane domain orphan receptor [Mus musculus]
           GI:4321619
          Length = 297

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 421 WLLHSVLFSGLYVKPSIMSNCKWK 350
           W++H +L +G+Y    +M N +W+
Sbjct: 183 WIIHKLLLTGVYGMVFLMYNSRWR 206


>At3g05010.1 68416.m00544 transmembrane protein, putative similar to
           GB:AAB61079; contains weak similarity to the SAPB
           protein (TR:E236624) [Arabidopsis thaliana]; similar to
           seven transmembrane domain orphan receptor (GI:4321619)
           [Mus musculus] contains 7 transmembrane domains;
          Length = 300

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 421 WLLHSVLFSGLYVKPSIMSNCKWK 350
           W++H +L +G+Y     M N KW+
Sbjct: 186 WVIHKLLLAGIYGMIFFMYNSKWR 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,677,719
Number of Sequences: 28952
Number of extensions: 301507
Number of successful extensions: 720
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)