Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B12
         (852 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       24   1.3  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   3.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   9.4  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -3

Query: 691 SLRCSR-SPTLWRLRCPATNPEASCWSEEPRAFEACVRYRRISF 563
           SLR +   PTL  +R P +NP      E  R F A  R    S+
Sbjct: 276 SLRAADIQPTLSSIRHPESNPSERVMRELGRIFRAYCRENHASW 319


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 349 PRENSRRSSISYLTAASRVPCHKE 420
           PR+ +R  S+SY T    VP H E
Sbjct: 56  PRDPNRARSVSYSTVIQSVP-HPE 78


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = -3

Query: 694 ISLRC--SRSPTLWRLRCPATNPEASCWSEEPRAF 596
           + L C  S  P         T+  +SCWSE+  +F
Sbjct: 14  LQLECNWSSGPNATLQSSACTDDLSSCWSEDMGSF 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,203
Number of Sequences: 336
Number of extensions: 3771
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23555563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)