Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_B12
(852 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 32 0.12
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 29 0.84
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 29 1.1
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi... 27 3.4
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 4.5
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 5.9
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac... 26 5.9
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S... 26 5.9
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 26 7.8
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 26 7.8
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 31.9 bits (69), Expect = 0.12
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 120 TMT*GSNKMALRLKK-DIKKASYYVWFLGAQESRGLRGEEFALPAITLLEERARELEPFK 296
+MT K+ RLK D+K S W A E ++GEEF IT +E + E++PF
Sbjct: 225 SMTSILEKIFERLKYIDVKTDSEDFW--DASEEHSIKGEEFHYKKITEGDEISNEIDPFG 282
Query: 297 V 299
+
Sbjct: 283 I 283
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 29.1 bits (62), Expect = 0.84
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 496 DSEHTAEMLYTHLQALIDRPENQKKFADIERKLQMRGALPTSKKPPDSSLGSEVSRES 669
+S++ A + T + I + E +K+ ++E S KPP + SEV+ ES
Sbjct: 576 NSQNFASPMQTDAEGDIVQNEEEKESVEVEEGKHKNDLPKVSPKPPTEGVDSEVNGES 633
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 28.7 bits (61), Expect = 1.1
Identities = 22/84 (26%), Positives = 38/84 (45%)
Frame = +1
Query: 478 VHAYRCDSEHTAEMLYTHLQALIDRPENQKKFADIERKLQMRGALPTSKKPPDSSLGSEV 657
+H +RC E++Y ID + K + K+ G+ T + D + +
Sbjct: 11 IHRWRCLGSEGNELIY------IDEEQTWKDYDPNSLKMNKAGS--TGAEVSDVTAEATE 62
Query: 658 SRESDSGSNEERCVANLYDSLAAE 729
+ES +G E+R LY+S +AE
Sbjct: 63 GKESSNG--EDRHTKRLYESTSAE 84
>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
Tim44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 427
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 107 IMSNCKWKNSKSRIRNQSRASNSQQTRNKS 18
+ SN WKN +I+N+SR Q KS
Sbjct: 205 VHSNPSWKNKVEQIKNESRLVRKIQELKKS 234
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 255 TLLEERA-RELEPFKVTLQVSHKGLKIIQNVTAKGKQQTIKHFIPHGSITSAVSQGDVV 428
+L+E A ++E + + H G+ I +T+ Q +++ HG I ++ DV+
Sbjct: 1629 SLMENEAFNKVEDAALQQSLKH-GIAYISEITSSNDQNIVQYLYRHGLIKVLIASRDVI 1686
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 288 VPTPLLSPRVT*SPVAQTPRPADREIPEP 202
V +P + P+VT +P P PA + P P
Sbjct: 718 VNSPAIKPQVTPAPPTPAPTPAVKHHPPP 746
>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 563 KRNSPISNASFKCAGLFRPARSLRIRRWAAKSPESRTPG 679
KR+ I ++ C G PA R W AK+ RT G
Sbjct: 24 KRSFHIQKSTCACCGY--PAAKTRSYNWGAKAKRRRTTG 60
>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 91
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 563 KRNSPISNASFKCAGLFRPARSLRIRRWAAKSPESRTPG 679
KR+ I ++ C G PA R W AK+ RT G
Sbjct: 24 KRSFHIQKSTCACCGY--PAAKTRSYNWGAKAKRRRTTG 60
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 25.8 bits (54), Expect = 7.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 616 SEEPRAFEACVRYRRISFD 560
+E+P +FE C+ + R+ FD
Sbjct: 657 TEKPLSFEECIMWARLQFD 675
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 410 HGTRDAAVRYEMLDRLLFSLGCYILYYFQAFM 315
H T+D A+ L L+F G I+YY Q M
Sbjct: 314 HETKDIALALNALTALIFMDGIPIIYYGQEQM 345
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,161,448
Number of Sequences: 5004
Number of extensions: 62395
Number of successful extensions: 183
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -