Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_B12
(852 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 32 0.50
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 29 3.6
07_03_0423 + 18035688-18036572,18036659-18036978,18052618-180527... 29 3.6
05_01_0361 - 2824728-2826043,2826288-2826507,2827616-2827702,282... 29 3.6
01_06_0021 - 25634648-25634976,25635084-25635237,25635405-256356... 29 4.7
08_02_1129 - 24513568-24514296,24515380-24515817 29 6.2
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 29 6.2
03_05_0378 - 23619169-23619225,23619389-23619454,23620052-236202... 28 8.2
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 32.3 bits (70), Expect = 0.50
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = +3
Query: 183 YYVWFLGAQESRGLRGEEFALPAITLLEERARELEPFKVTLQVSHKGLKIIQNVTAKGKQ 362
++ W GA+ S L +F LP +T+ +EP K + G+KI T G
Sbjct: 40 FWTWLTGAR-SNALPPPDFTLPGVTIPPPLPDLVEPGKTKITTLANGVKIASE-TTPGPS 97
Query: 363 QTIKHFIPHGSITSA 407
++ ++ GS+ A
Sbjct: 98 CSVGVYVNCGSVHEA 112
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +2
Query: 578 ISNASFKCAGLFRPARSLRIRRWAAKSPESRTPGATKRDASRTY--MTVWLLSSSKSCRQ 751
+ N S G FRP+ ++IRR+ + SR P R + ++++ SS S R+
Sbjct: 9 VGNISLFHIGSFRPSHEIQIRRFRSTERYSRVPSRRLLQPQRAFNLISIYKRSSWSSARR 68
>07_03_0423 +
18035688-18036572,18036659-18036978,18052618-18052724,
18053001-18053104,18054129-18054328,18054422-18054522,
18054695-18054841,18055007-18055166,18055287-18055368,
18056070-18056336,18056846-18056973,18057513-18057672
Length = 886
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 318 KGLKIIQNVTAKGKQQTIKHFIPHGSITSAVSQGDVVACVLLL 446
+G + I ++ + +QTI HFI G + V GD+V +L+
Sbjct: 672 EGTRTIDSIISAYAKQTIPHFIGAGHVILDVIPGDMVVNAMLV 714
>05_01_0361 -
2824728-2826043,2826288-2826507,2827616-2827702,
2827726-2827980,2828704-2828733
Length = 635
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = -3
Query: 634 PEASCWSEEPR---AFEACVRYRRISFDSPAYRSALVNACRASPPCAQSRICKRG 479
P +C E P F+A V + +F+SPA+ S L A A+ A + + KRG
Sbjct: 31 PSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAAAEVALNELSKRG 85
>01_06_0021 -
25634648-25634976,25635084-25635237,25635405-25635605,
25636876-25636913,25638166-25638438,25640701-25640932
Length = 408
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +1
Query: 352 RENSRRSSISYLTAASRVPCHKEMWSRVCYCCTTLSPAALVHVHAYRCDSEHTAEMLYTH 531
R + +SI+YL A + M + ++ A HV Y ++TA Y
Sbjct: 287 RRRNSTASIAYLKGA------RAMLADGLLATASVETVAEAHVRVYEAMGDNTAGGRYIC 340
Query: 532 LQALIDRPENQKKFADIERKL 594
++ RPE +FA++ER+L
Sbjct: 341 YDHVVKRPE---EFAELERQL 358
>08_02_1129 - 24513568-24514296,24515380-24515817
Length = 388
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 463 PVRGLYSSNTHATTSPCDTALVMLP*GMKCLI 368
P G+YS H D +L +L GM+C I
Sbjct: 109 PFHGVYSQRIHGVHGAVDISLALLREGMECTI 140
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 71 LTWNFSIYNYS*L--KLSNNDIRLQQNGVAT*KGYQESV 181
L WN +I + K+ NND+R++ + V T +G+Q+ V
Sbjct: 3145 LAWNNNILTTGGMDGKIVNNDVRIRNHVVQTYQGHQQEV 3183
>03_05_0378 -
23619169-23619225,23619389-23619454,23620052-23620224,
23620454-23620664,23621056-23621280,23622157-23622493,
23624200-23624627
Length = 498
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 561 SKEIRRYRTQASNARGSSDQQEASGFVAGQRSLQRVGLREQRREMRRE 704
+KE+ + T A+ R D+ E G AG+R + + L+ Q E R+
Sbjct: 89 AKELLKKVTDAARRRREDDEDEDEGEEAGRRRVADILLKRQFEESGRK 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,461,400
Number of Sequences: 37544
Number of extensions: 456699
Number of successful extensions: 1609
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1606
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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