Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B12
         (852 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07)                 31   0.90 
SB_36200| Best HMM Match : E1_dh (HMM E-Value=5.1e-40)                 31   1.2  
SB_6907| Best HMM Match : PAN (HMM E-Value=0.019)                      30   2.1  
SB_29300| Best HMM Match : GFO_IDH_MocA (HMM E-Value=2.1e-17)          30   2.7  
SB_28739| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_4162| Best HMM Match : GMAP (HMM E-Value=3)                         29   3.6  
SB_54868| Best HMM Match : Rhabdo_NV (HMM E-Value=1.1)                 29   4.8  
SB_44571| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045)                    29   6.3  
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40)                    28   8.4  

>SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07)
          Length = 406

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 219 GLRGEEFALPAITLLEERARELEPFKVTLQVSHKG-LKIIQNVTAKGKQQTIKHFIP 386
           GL G +  +PA+  + +++ EL    V + + H+G L ++ NV  K  +Q    F P
Sbjct: 223 GLEGCDVLVPAMKAIIDKSSELGVESVVMGMPHRGRLDVLANVCRKPLEQIFTQFDP 279


>SB_36200| Best HMM Match : E1_dh (HMM E-Value=5.1e-40)
          Length = 382

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 207 QESRGLRGEEFALPAITLLEERARELEPFKVTLQVSHKG-LKIIQNVTAKGKQQTIKHF 380
           Q+   L G E A+PA+  L E A E    +  + ++H+G L ++ N+  K  Q     F
Sbjct: 54  QKRFSLEGCESAIPALDALIEGAAERGVEQFVMGMAHRGRLNVLANIFGKNTQNIFSEF 112


>SB_6907| Best HMM Match : PAN (HMM E-Value=0.019)
          Length = 324

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 538 LVNACRASPPCAQSRICKRGRE 473
           LVNAC  S PC+  R C+ G E
Sbjct: 119 LVNACLTSAPCSSHRACRIGYE 140


>SB_29300| Best HMM Match : GFO_IDH_MocA (HMM E-Value=2.1e-17)
          Length = 634

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 538 LVNACRASPPCAQSRICKRGRE 473
           LVNAC  S PC+  R C+ G E
Sbjct: 422 LVNACLTSVPCSSHRACRIGYE 443


>SB_28739| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
 Frame = +1

Query: 397 SRVPCHKEMWSRVCYCCTTLSPAALVHVHAYRCDSEHTAEMLYTHLQALIDRPENQKKFA 576
           +R   H    +R  +C   +    +  VH +   S H    LY H+Q L D  +   +  
Sbjct: 158 TRTRHHHGTRTRHEHCTIMVHEQGMTTVHEHGARSRHDTRALYIHVQNLDDCTDWTDELC 217

Query: 577 DIERKL--QMRGALPTSKKP--PDSSLGSEVSRE 666
            +E+ +    +   PT+  P   D+++ +E S+E
Sbjct: 218 SLEQIILEDEQSTEPTNTTPRHGDTAINTENSQE 251


>SB_4162| Best HMM Match : GMAP (HMM E-Value=3)
          Length = 219

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +1

Query: 514 EMLYTHLQAL-IDRPENQKKFADIERKLQMRGALPTSKKPPDSSLGSEVSRESDSGSNEE 690
           ++++ H++A  + R ++Q  F    ++L+  G++    +PP S+ GSE S  SD   + +
Sbjct: 127 DVVWAHIRAASLKRMQSQTSF----KRLKKEGSISEVPEPPPSAKGSEDSDSSDENYDND 182


>SB_54868| Best HMM Match : Rhabdo_NV (HMM E-Value=1.1)
          Length = 775

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
 Frame = +1

Query: 379 SYLTAASRVPCHKEM--WS-------RVCYCCTTLSPAALVHVHAYRC 495
           +Y  + SR+ CH+    W+         CYCCT L  + L H     C
Sbjct: 4   NYFASNSRMVCHQRQVCWATNADCFGNQCYCCTRLKGSVLRHASVVPC 51


>SB_44571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 508 TAEMLYTHLQALIDRPENQKKFADIERKLQMRGALPTSK 624
           TA+ LY  ++ ++D P  ++  A I R +Q R   PT +
Sbjct: 302 TADQLYRTIRRVVDEPRFKENAARISRLMQDRRRSPTEE 340


>SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045)
          Length = 514

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 469 GQPVRGLYSSNTHATTSPCDTALVMLP*GM 380
           G P + LY   THATT+P  T     P G+
Sbjct: 260 GVPTQQLYPGGTHATTTPRGTHATTTPRGV 289


>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1870

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -1

Query: 318  YVKPAT*P*RVPTPLLSPRVT*SPVAQTPRPADREIPEPRGTKRNTTLS 172
            Y+   T P   P P  SP  T  PV   PRP   E P+ RG    +T++
Sbjct: 1568 YIGSTTLPITPPPPTPSPPQTPPPVNTPPRPETPE-PQYRGNIDTSTVT 1615


>SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 458 HRLPWFTSTLTDATLSTRRRCS 523
           +RLPW TS+L D   S   RCS
Sbjct: 702 YRLPWKTSSLADICHSDDERCS 723


>SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40)
          Length = 434

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 583 ERKLQMRGALPTSKKPPDSSLGSEVSRESDSGSNEER 693
           ER+L+  G    + +P   S  S ++R +  GSNE +
Sbjct: 208 ERRLKQSGGQTPTSRPSRPSRRSRIARNNSDGSNESQ 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,787,083
Number of Sequences: 59808
Number of extensions: 532326
Number of successful extensions: 1825
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1822
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)