Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B12
         (852 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family...    35   0.060
At3g47570.1 68416.m05179 leucine-rich repeat transmembrane prote...    30   2.2  
At2g45840.1 68415.m05701 expressed protein                             28   6.9  
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    28   6.9  
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    28   6.9  

>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
           protein 
          Length = 477

 Score = 35.1 bits (77), Expect = 0.060
 Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
 Frame = +3

Query: 90  FTITHN*SYPTMT*GSNKMALRLKKDIKKASYYVWFLGAQESRG--LRGEEFALPAITLL 263
           F  T N S   +     ++A +LKK I  ASY   ++    SRG  +        ++ L 
Sbjct: 212 FNFTLNFSIYQIQSNFEELASQLKKGINLASYENLYITLSNSRGSTVAPPTIVHSSVLLT 271

Query: 264 EERARELEPFKVTLQVSH-KGLKIIQNVTAKGKQQTIKHFIPHGSITSA 407
              +  L+    T+  SH K L +   V  K KQ  +   +PH   TS+
Sbjct: 272 FGSSSRLKQLAQTITSSHSKNLGLNHTVFGKVKQVRLSSILPHSPATSS 320


>At3g47570.1 68416.m05179 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase Xa21 - Oryza sativa,
           PIR:A57676
          Length = 1010

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = +3

Query: 12  IPGFVACLLRIRSPALVANS*LGIFPFTITHN*SYPTMT*GSNKMALRLKKDI 170
           IP  VA L +I S  LVAN+  G+FP  + +  S   +  G N  + RL+ D+
Sbjct: 202 IPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDL 254


>At2g45840.1 68415.m05701 expressed protein
          Length = 523

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 691 SLRCSRSPTLWRLRCPATNPEASCWS-EEPRAFEACVRY-RRISFDSPAYR 545
           +L+CS    +    CPA+NPE S  S +EP   E C  Y R I  D  A+R
Sbjct: 87  TLQCSLDQNIATQTCPASNPEKSQPSKDEP---ETCPDYFRWIHKDLEAWR 134


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
 Frame = -3

Query: 676 RSPTLWRLRCPATNPEASCWSEEPRAFEACVRYRRIS---FDSPAYRSALVNACRASP-P 509
           RSP   RLR P         S  P       R   IS      PA R    ++  +SP P
Sbjct: 307 RSPPPRRLRSPPRRSPIRRRSRSPIRRPGRSRSSSISPRKGRGPAGRRGRSSSYSSSPSP 366

Query: 508 CAQSRICKRGREPGQPVRG-LYSSNTHATTSP 416
               R   R R P +P+RG   SSN+ +++SP
Sbjct: 367 RRIPRKISRSRSPKRPLRGKRSSSNSSSSSSP 398


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
 Frame = -3

Query: 676 RSPTLWRLRCPATNPEASCWSEEPRAFEACVRYRRIS---FDSPAYRSALVNACRASP-P 509
           RSP   RLR P         S  P       R   IS      PA R    ++  +SP P
Sbjct: 314 RSPPPRRLRSPPRRSPIRRRSRSPIRRPGRSRSSSISPRKGRGPAGRRGRSSSYSSSPSP 373

Query: 508 CAQSRICKRGREPGQPVRG-LYSSNTHATTSP 416
               R   R R P +P+RG   SSN+ +++SP
Sbjct: 374 RRIPRKISRSRSPKRPLRGKRSSSNSSSSSSP 405


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,920,048
Number of Sequences: 28952
Number of extensions: 348302
Number of successful extensions: 1253
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)