Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_B11
(844 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621... 32 0.66
03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248 32 0.66
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 31 1.1
12_01_0648 + 5496696-5497052 25 1.3
07_03_0793 + 21552499-21552729 30 2.0
02_05_0059 - 25482207-25482271,25482432-25482651 30 2.0
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962 30 2.0
12_02_0837 - 23554013-23554771 30 2.7
12_02_1261 + 27410921-27413401 29 3.5
11_06_0257 + 21746643-21748091 29 3.5
10_04_0012 + 7555067-7555867 29 4.6
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 29 6.1
11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717 29 6.1
08_02_0386 - 16575636-16575698,16575799-16575858,16575947-165762... 29 6.1
04_03_0801 - 19828175-19828770,19828913-19828994 29 6.1
02_05_0419 - 28814754-28816114,28816749-28817435,28817554-288177... 29 6.1
01_05_0791 + 25267885-25267930,25268258-25268713,25268802-252688... 29 6.1
02_05_0435 - 28958422-28958665,28959328-28959462,28960056-289602... 28 8.1
02_01_0574 + 4247469-4248196,4249501-4249691,4250565-4251022 28 8.1
>04_04_1032 -
30259180-30260519,30260650-30260720,30261099-30262118,
30263886-30264121
Length = 888
Score = 31.9 bits (69), Expect = 0.66
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 184 VCTCLCGVLGWARDRNRSWWP 246
+ C G++ W R RN SWWP
Sbjct: 26 ITDCSPGIIVWVRRRNGSWWP 46
>03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248
Length = 496
Score = 31.9 bits (69), Expect = 0.66
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 380 SQVGMGQPVLV-VHRSPLHVTSAVEALVVPRLSHESSARARV*GSAGHHERFRSRAQPK 207
+ VG G P+ VH SPL TS VVP + A+ R +A R R +P+
Sbjct: 129 AMVGSGHPMAAPVHSSPLATTSGSNHAVVPDAPPQEPAKRRRRNTAAAATARRGRGRPR 187
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 424 PGXPLVHKRDKDAIYGHPLVPPAGSDLRKV 513
PG V + D +Y HP+VP AG L+ V
Sbjct: 769 PGMMSVRVHETDGVYDHPIVPMAGEALQVV 798
>12_01_0648 + 5496696-5497052
Length = 118
Score = 25.4 bits (53), Expect(2) = 1.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 396 GGSALEPGGDGSACARGTS 340
GGSA PGG+ SA G S
Sbjct: 70 GGSASAPGGNSSALGSGAS 88
Score = 24.2 bits (50), Expect(2) = 1.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 429 PRGGRERVLPAGGSALEPGG 370
P G LP GG A+ PGG
Sbjct: 10 PPGSGMAALPGGGEAVLPGG 29
>07_03_0793 + 21552499-21552729
Length = 76
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 426 RGGRERVLPAGGSALEPGGDGSACARGTSL 337
+GG +RV +GG ++ GGD + ARG +
Sbjct: 22 QGGGQRVNRSGGGSMRRGGDNGSLARGDDI 51
>02_05_0059 - 25482207-25482271,25482432-25482651
Length = 94
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 426 RGGRERVLPAGGSALEPGGDGSACARG 346
RGG ++V GG +++ GGD + ARG
Sbjct: 22 RGGGQQVNDGGGGSMKGGGDSGSLARG 48
>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
Length = 774
Score = 30.3 bits (65), Expect = 2.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 202 GVLGWARDRNRSWWPAE 252
G L W R RN SWWP +
Sbjct: 25 GALVWVRRRNGSWWPGQ 41
>12_02_0837 - 23554013-23554771
Length = 252
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = -2
Query: 690 RSTCIACTINESTSGSAM*YGFS*RICLLNTAMSSLKDSEEHTSPPATPGSRGVQVASS 514
R C+ + + + A + + + + A++ LKD +HT+ A PG R + VA++
Sbjct: 181 RKGCVTFYVYAARTAGARGFARADELRAVVEAVAKLKDFLDHTAMLALPGQRSIDVAAA 239
>12_02_1261 + 27410921-27413401
Length = 826
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 190 TCLCGVLGWARDRNRSWWPA 249
T G L WA+ + R WWPA
Sbjct: 9 TLAAGDLVWAKSKRRPWWPA 28
>11_06_0257 + 21746643-21748091
Length = 482
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Frame = -2
Query: 408 VLPAGGSALEPGGDGSACARGTSLPPPCNL---RRGGSRRT*AEP*KLGPSPGVGLRW 244
VL G A GGD +AC P C L R G R T + P G GLRW
Sbjct: 189 VLSCGPHAAAGGGDAAACVVLLLHMPRCELSYARPGDERWT-----WISPGAGTGLRW 241
>10_04_0012 + 7555067-7555867
Length = 266
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 393 GSALEPGGDGSACARGTSLPPPCNLRRGGSR 301
GS +P GD +GTS PC LR+G R
Sbjct: 8 GSCRKPCGDQGRQQQGTSFLHPCPLRQGEGR 38
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 202 GVLGWARDRNRSW-WPAEPYTRARAELSWLSLGT 300
GVLGW +NRS WP +RAR L L LG+
Sbjct: 58 GVLGWGEIKNRSCPWPVVRLSRAR--LVTLCLGS 89
>11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717
Length = 1055
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 208 LGWARDRNRSWWPAEPYTRARAELSWLSLGTTRASTAEVTW 330
L W + R+ WWP + + A A S L+L TRA V +
Sbjct: 119 LVWGKVRSHPWWPGQVFDAADA--SKLALKHTRAGAPLVAY 157
>08_02_0386 -
16575636-16575698,16575799-16575858,16575947-16576239,
16576361-16576517,16576601-16576948,16577047-16577177,
16577417-16577882,16578425-16579132
Length = 741
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -1
Query: 337 PPSM*PPPWRLSSYLG*AMKARPEPGCRAPLATTNDFGHGP 215
PPS PPPW ++ + P+P AP A G P
Sbjct: 15 PPSPTPPPWLHGPHVPSTSVSPPDPATEAPPAPKQHRGPRP 55
>04_03_0801 - 19828175-19828770,19828913-19828994
Length = 225
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 399 AGGSALEPGGDGSACARGTSLPPPC 325
+GG E GG G C + PPPC
Sbjct: 173 SGGHGGECGGGGGGCKKPCCSPPPC 197
>02_05_0419 -
28814754-28816114,28816749-28817435,28817554-28817774,
28818536-28818750
Length = 827
Score = 28.7 bits (61), Expect = 6.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 202 GVLGWARDRNRSWWP 246
G + W R RN SWWP
Sbjct: 25 GTIVWVRRRNGSWWP 39
>01_05_0791 +
25267885-25267930,25268258-25268713,25268802-25268832,
25268949-25269255
Length = 279
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +1
Query: 364 PIPTWLQCTTPRRQHPLTPSPGXPLVHKRDKDAIYGHPLVPPAG 495
P PT + TTP P TP G P+ YG + PP G
Sbjct: 194 PPPTPMTPTTPMTPTPTTPDTGTPIYGGSTTPPDYG-SMSPPGG 236
>02_05_0435 -
28958422-28958665,28959328-28959462,28960056-28960211,
28960287-28961092,28961177-28961254,28961809-28961883,
28962127-28962215,28962735-28962843,28963007-28963086,
28963739-28963794,28963876-28963958,28964049-28964118,
28964200-28964309,28964395-28964548,28965183-28965382,
28966175-28966348,28969080-28969277,28970564-28970791
Length = 1014
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 534 PGTLAWRAETCAPRSLSTKTLRYSA 608
PG +WR TCA LST T + +
Sbjct: 774 PGHFSWRPHTCAGSGLSTDTSNHGS 798
>02_01_0574 + 4247469-4248196,4249501-4249691,4250565-4251022
Length = 458
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 293 RLSHESSARARV*GSAGHHERFRSRAQPKTPHKH 192
RL H+ V +A HH RS A+ + H+H
Sbjct: 378 RLQHDGDGDDDVAAAAAHHHLMRSLARQQQQHRH 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,901,859
Number of Sequences: 37544
Number of extensions: 710094
Number of successful extensions: 2720
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2714
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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