Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_B11
(844 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.) 156 2e-38
SB_26157| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 6e-22
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5) 30 2.7
SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012) 30 2.7
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_51641| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27) 29 6.2
SB_31849| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19) 28 8.2
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 28 8.2
>SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 810
Score = 156 bits (378), Expect = 2e-38
Identities = 78/116 (67%), Positives = 85/116 (73%)
Frame = +2
Query: 446 RETKTLFTGIPWFPLLALIFEKCELATCTPRDPGVAGGDVCSSESFNEDIAVFSKQIRQE 625
+ K + G P FPLLALIFEKCELATCTPR+PG GGDVCSS SFNEDI F+KQ
Sbjct: 68 KRDKEVLYGHPLFPLLALIFEKCELATCTPREPGAVGGDVCSSASFNEDIQAFAKQ---- 123
Query: 626 KPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXMPIDLVI 793
M+QAIQVLRFHLLELEKVHELCDNFC RYI+CLKG MPIDLV+
Sbjct: 124 -------------MIQAIQVLRFHLLELEKVHELCDNFCKRYITCLKGKMPIDLVM 166
Score = 33.9 bits (74), Expect = 0.17
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 439 VHKRDKDAIYGHPLVP 486
+HKRDK+ +YGHPL P
Sbjct: 66 IHKRDKEVLYGHPLFP 81
>SB_26157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1097
Score = 101 bits (243), Expect = 6e-22
Identities = 53/101 (52%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
Frame = +2
Query: 476 PWFPLLALIFEKCELATCTPRDPGVAGGDVCSSESFNEDIAVFSKQIRQE-KPYYIADPE 652
P FPLLA++ EKCE AT T D +S++F+ DI F Q +E KP + D E
Sbjct: 678 PLFPLLAMLLEKCEHATQT--------SDCPTSDAFDNDIKNFMMQHNREGKPCFSGDQE 729
Query: 653 VDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGXM 775
+D+L+++AIQV R HLLELEKV+ELC +FC RYI+CLKG M
Sbjct: 730 LDNLIIKAIQVFRIHLLELEKVNELCKDFCQRYIACLKGKM 770
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 31.5 bits (68), Expect = 0.89
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +1
Query: 394 PRRQHPLTPSPGXPLVHKRDKDAIYGHPLVPPAGSDLRKV*ASDLY 531
P HP P PG P H R HP VPP G+ +++ S Y
Sbjct: 574 PGAPHPRVPPPGTP--HPRVPPPGAPHPKVPPPGAPYQRLPYSGAY 617
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 394 PRRQHPLTPSPGXPLVHKRDKDAIYGHPLVPPAGSDLRKV 513
P HP P PG P H R HP VPP G+ ++V
Sbjct: 464 PGAPHPRVPPPGAP--HPRVPPPGAPHPRVPPPGAPHQRV 501
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 394 PRRQHPLTPSPGXPLVHKRDKDAIYGHPLVPPAGSDLRKV 513
P HP PSPG H R HP VPP G+ ++V
Sbjct: 384 PGATHPRVPSPGAS--HPRVPPPGAPHPRVPPPGASHQRV 421
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +1
Query: 394 PRRQHPLTPSPGXPLVHKRDKDAIYGHPLVPPAGSDLRKV 513
P HP P PG P H R HP VPP G+ +V
Sbjct: 524 PGAPHPRVPPPGAP--HPRVPPPGAPHPRVPPPGASHPRV 561
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +1
Query: 394 PRRQHPLTPSPGXPLVHKRDKDAIYGHPLVPPAGS 498
P HP P PG P H R HP VPP G+
Sbjct: 554 PGASHPRVPPPGAP--HPRVPPPGAPHPRVPPPGT 586
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +1
Query: 394 PRRQHPLTPSPGXPLVHKRDKDAIYGHPLVPPAGS 498
P HP P PG P H R HP VPP G+
Sbjct: 424 PGAPHPRVPPPGAP--HPRFPPPGAPHPRVPPPGA 456
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +1
Query: 394 PRRQHPLTPSPGXPLVHKRDKDAIYGHPLVPPAGS 498
P HP P PG P H R HP VPP G+
Sbjct: 444 PGAPHPRVPPPGAP--HPRVPPPGAPHPRVPPPGA 476
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +1
Query: 394 PRRQHPLTPSPGXPLVHKRDKDAIYGHPLVPPAGS 498
P HP P PG P H R HP VPP G+
Sbjct: 504 PGAPHPRVPPPGAP--HPRVPPPGAPHPRVPPPGA 536
>SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5)
Length = 334
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +2
Query: 83 PTNTLHE*LRPSRVHYDTSELAGRCDSVRSY--MCMCARACVVS*VGPV 223
P N L PSR H D + + C V Y M MC+ +C V P+
Sbjct: 172 PHNVLMSMCFPSRAHVDVAPITCSCRCVPHYMLMLMCSPSCAYVDVFPI 220
>SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)
Length = 1348
Score = 29.9 bits (64), Expect = 2.7
Identities = 27/85 (31%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Frame = -2
Query: 606 LNTAMSSLKDSEEHTSPPATPGSRGVQVASSHFSK-IRASRG-NQGMPVNSVFVSLVD*W 433
LNT + D E T GVQ K I S G ++ + F SL W
Sbjct: 551 LNTRRDEMSDQELRVMAQRTSPVEGVQDPFEVPPKQIVDSEGKSEKRSDKNAFSSLHKQW 610
Query: 432 XPRGGRERVLPAGGSALEPGGDGSA 358
P G RE + GG GG SA
Sbjct: 611 SPFGSRESLNRGGGEESSGGGGSSA 635
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 14 PDCRARRASRFTAPRSATPRPEPPT 88
P+CR T+P +TPRP PPT
Sbjct: 1340 PNCRKSCGLCTTSPIPSTPRPRPPT 1364
>SB_51641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 280 SWLSLGTTRASTAEVTWRGERCTTSTG*PI 369
+W+ G + TAEVTW G+ G P+
Sbjct: 156 AWVVFGKDKIETAEVTWHGKGNEDKRGKPV 185
>SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27)
Length = 527
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 245 GHHERFRSRAQPKTPHKHVHTYTYMIGHCHSGPLAH*CHNA 123
G+HE + PK + T+ + IG C GP H HNA
Sbjct: 180 GYHELRQLARHPKYKTELCRTF-HTIGFCPYGPRCHFIHNA 219
>SB_31849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +2
Query: 5 ECPPDCRARR-ASRFTAPRSATPRPEPPTNTLHE*LRPSRVHYDTSELAGRCDSVRS 172
+ PP RAR R PR P P+PP ++ RP + E DS RS
Sbjct: 21 QIPPWTRARSLVDRARYPRGTAPEPDPPVDSAR--ARPPFPPWTVPEQETPVDSARS 75
>SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2362
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -2
Query: 462 SVFVSLVD*WXPRGGRERVLPAGGSALEPGGDGSACARGTSLPP 331
SV S+ D W R+ VLP S L+ GG G+A A +L P
Sbjct: 259 SVLQSVPDCWEQVNIRKAVLPKLWSLLKNGGSGNASAIFPNLLP 302
>SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)
Length = 1341
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 162 VSDHICVCVHVLVWCLRLG 218
VSD +CVC +L CLR+G
Sbjct: 61 VSDVVCVCDSILYKCLRVG 79
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/33 (54%), Positives = 19/33 (57%)
Frame = +2
Query: 239 GGQRSPTPGLGPSFHGSA*VRREPPRRRLHGGG 337
G PTP PS GS+ VRR PRRR GGG
Sbjct: 977 GSPSIPTPS-EPSSSGSSIVRR--PRRRRGGGG 1006
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,241,814
Number of Sequences: 59808
Number of extensions: 667285
Number of successful extensions: 2085
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2058
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -