Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_B11
         (844 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51745.1 68414.m05831 expressed protein                             29   3.9  
At3g50580.1 68416.m05532 proline-rich family protein contains pr...    28   6.8  
At3g03140.1 68416.m00310 expressed protein                             28   8.9  

>At1g51745.1 68414.m05831 expressed protein
          Length = 635

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 202 GVLGWARDRNRSWWPAE 252
           G L W R RN SWWP +
Sbjct: 17  GRLVWVRRRNGSWWPGQ 33


>At3g50580.1 68416.m05532 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 265

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 22/69 (31%), Positives = 27/69 (39%)
 Frame = +1

Query: 241 WPAEPYTRARAELSWLSLGTTRASTAEVTWRGERCTTSTG*PIPTWLQCTTPRRQHPLTP 420
           WP  P    R EL  L+ G +        W+   CT S G      +  +TP    P TP
Sbjct: 33  WP-NPSEITRNELMLLNTGHSFGYGDSKVWK---CTYSNGSAPAISISPSTPIPSTPSTP 88

Query: 421 SPGXPLVHK 447
           SP  P   K
Sbjct: 89  SPPPPAPKK 97


>At3g03140.1 68416.m00310 expressed protein
          Length = 769

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 202 GVLGWARDRNRSWWP 246
           G + W R RN SWWP
Sbjct: 14  GSIVWVRRRNGSWWP 28


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,077,192
Number of Sequences: 28952
Number of extensions: 445517
Number of successful extensions: 1183
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)