Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_B05
(922 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 64 4e-11
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 32 0.13
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 30 0.53
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po... 30 0.53
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 28 1.6
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.6
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 2.1
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 26 6.5
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 26 6.5
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.5
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 26 8.6
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 8.6
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 26 8.6
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 63.7 bits (148), Expect = 4e-11
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +1
Query: 187 DKGLKTSEDARFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKD 363
+ GL ++A +A+S +F +P + K LVVQ+ V E+ ++CGG YLK+ + +
Sbjct: 89 EAGLVMKDEAAHHAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGE 147
Query: 364 MHGETPYEIMFGPDICGPGTKKVHVIF 444
M Y IMFGPD CG +VH IF
Sbjct: 148 MSNSIDYRIMFGPDKCGV-NDRVHFIF 173
Score = 56.0 bits (129), Expect = 7e-09
Identities = 28/53 (52%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Frame = +2
Query: 506 THLYTLIAKPDNTYEVLIDNEKVESGDLEADW--DFLPPKKIKDPEAKKPEDW 658
T+LYTLI KPD T+EV I+ + V G L D+ LPP +I DPE KP DW
Sbjct: 201 TNLYTLIVKPDQTFEVRINGDVVRQGSLFYDFIPPVLPPVEIYDPEDIKPADW 253
Score = 35.1 bits (77), Expect = 0.014
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 596 DWDFLPPKKIKDPEAKKPEDW 658
DWD P+ I DP+A KPEDW
Sbjct: 269 DWDEDAPRMIPDPDAVKPEDW 289
Score = 31.5 bits (68), Expect = 0.17
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 596 DWDFLPPKKIKDPEAKKPEDW 658
DW P I DPEA+KPEDW
Sbjct: 288 DWLEDEPLYIPDPEAQKPEDW 308
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 31.9 bits (69), Expect = 0.13
Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 1/129 (0%)
Frame = +2
Query: 272 WSSSSLSNMNKTLTVEADTSRSLTANWSRRTCTERLHMRLCSALTSVVQEPRRYT*SSXY 451
+ +S SN +K + A ++ + WS S + +Y+ S
Sbjct: 88 YKPNSTSNPSKHTSAYASYNKGKNSKWSSP---------FASTTKKPQESSEKYSKKSST 138
Query: 452 KGKNHLIKKDIRCKDDVYTHLYTLIAKPDNTYEVLIDNEKVESGDLE-ADWDFLPPKKIK 628
+ K H KK +D Y+H+Y + P + + + ++ ES E + D+LP +K
Sbjct: 139 RKKEHFNKKPSFPRDTEYSHIYNMKYDPRSGIGIRVKRQEPESLKKENNNSDYLPKSAMK 198
Query: 629 DPEAKKPED 655
+ P+D
Sbjct: 199 QKKG-GPKD 206
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 29.9 bits (64), Expect = 0.53
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +1
Query: 184 DDKGLKTSEDARFYAL-SRKFKPFSNEGK--PLVVQFTVKHEQDIDCGGGYLKVFDCKLE 354
D+ GL T + + + L S P + + P+V+ F VK + CG Y+ + +
Sbjct: 72 DEYGLITLKSNKPHILISNLENPTTRQSSSVPIVLSFQVKPTKPWTCGHAYVSLVH-QSN 130
Query: 355 QKDMHGETPYEIMFGPDICG 414
K++ E P I FG CG
Sbjct: 131 PKNVSKEPPSVIRFGVKKCG 150
>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 29.9 bits (64), Expect = 0.53
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 594 PIGTSFRPRKSRTLKPRNQKTGMTSPLFQTPKTRS 698
P+G S+RP+ SRT ++ + MT +T K +S
Sbjct: 168 PLGKSYRPKASRTTSSQSVASTMTKSSTKTSKKKS 202
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 28.3 bits (60), Expect = 1.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 760 PSLQVWGIWVWNVFR 716
P Q WG W+WN FR
Sbjct: 413 PKQQGWGSWMWNSFR 427
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -1
Query: 151 NLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTT 20
N N F + + S +SGNFS T Q DN S +T
Sbjct: 575 NSNSQRPFSTVPSESNVFSRNASGNFSMSQTHQPTTDNTSSFST 618
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 534 PTTPMKSSLTMRKLNLAT*RPIGTSFRPRKSRTLKPRNQKTGMTSPLFQTPK 689
P+ P SS +LA+ P ++FRP+ S T+ + TSPL K
Sbjct: 314 PSYPYSSSRPSASASLAS-SPTRSAFRPKTSETVSSEVVSSPPTSPLHSPVK 364
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -2
Query: 114 CTPNCFPTNHQETSPQRIHHNLSKIMPAS*QRPSTT 7
C P FP N+QE H+ I AS Q + T
Sbjct: 791 CKPESFPANYQEVLDYYTHNGFRVIACASKQLENCT 826
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 26.2 bits (55), Expect = 6.5
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = -2
Query: 438 YVYLLGSWTTDVRAEHNLIWS---LSVHVLLLQFAVKDLEVSASTVNVLFMFDSELDDQG 268
Y+ L GS D R++ +++ V++ LL L ++ T + + +FDS+ +
Sbjct: 779 YLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQ 838
Query: 267 FTLITERFELTGESIEPRIFR 205
+R G++ E RI+R
Sbjct: 839 DLQAQDRAHRIGQTKEVRIYR 859
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 575 ESGDLEADWDFLPPKKIKDPEAKKPEDW 658
E L+ LP + K P AKKPED+
Sbjct: 157 EKNTLDLKHCLLPSPEYKAPPAKKPEDY 184
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 8.6
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Frame = +2
Query: 266 NPWSSSSLSNMNKTLTV----EADTSRSLTANWSRR-TCTERLHMRLCSALTSVVQEPRR 430
NP + + +N+ T V E D S+ + S+R C E + RLCS S P
Sbjct: 54 NPCKACASNNLECTYPVKDEKEMDYSKDYFIDLSKRYKCLEYIVERLCSTKVSTYTTPSL 113
Query: 431 YT*SSXYKGKNHLIKKDI 484
+ + L+ D+
Sbjct: 114 IEVCNRISNQKSLLSSDV 131
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 69 EEKFPDDSWESNWVYS 116
EEKFPD +W +W S
Sbjct: 251 EEKFPDIAWRVSWSLS 266
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 596 DWDFLPPKKIKDPEAKKPEDW 658
DWD +P ++ K EA KP DW
Sbjct: 209 DWDDVPWRE-KPLEAMKPRDW 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,557,885
Number of Sequences: 5004
Number of extensions: 76566
Number of successful extensions: 245
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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