Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_B05
(922 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) 117 2e-26
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0) 65 9e-11
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.080
SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04) 33 0.25
SB_786| Best HMM Match : EGF (HMM E-Value=0) 29 4.0
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_5367| Best HMM Match : wnt (HMM E-Value=0) 29 5.3
SB_27442| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_9471| Best HMM Match : VQ (HMM E-Value=6.2) 29 7.0
>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 117 bits (281), Expect = 2e-26
Identities = 54/84 (64%), Positives = 57/84 (67%)
Frame = +2
Query: 491 KDDVYTHLYTLIAKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDWXXXX 670
KDD THLYTLI +PDNTYEV IDNEKVESG+LE DWDFLPPK IKDPEAKKPEDW
Sbjct: 847 KDDEMTHLYTLIVRPDNTYEVKIDNEKVESGELEKDWDFLPPKTIKDPEAKKPEDWDDKK 906
Query: 671 XXXXXXXXXXXXXXXXXHIPDPDA 742
+IPDPDA
Sbjct: 907 MIDDPEDKKPEDWDKPQNIPDPDA 930
Score = 89.0 bits (211), Expect = 5e-18
Identities = 39/54 (72%), Positives = 47/54 (87%), Gaps = 1/54 (1%)
Frame = +1
Query: 175 DPEDDKGLKTSEDARFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLK 333
D E DKG++TSEDA+FY +S KF KPF+NEGK LV+QF+VKHEQ+IDCGGGY K
Sbjct: 794 DAEADKGIQTSEDAKFYGISAKFEKPFTNEGKTLVIQFSVKHEQNIDCGGGYAK 847
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/37 (59%), Positives = 24/37 (64%)
Frame = +3
Query: 60 VFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFF 170
V F EKF D SWE WV S G + GKFK TAGKF+
Sbjct: 756 VHFLEKFEDKSWEDRWVSSTSKGAQQGKFKWTAGKFY 792
Score = 35.5 bits (78), Expect = 0.061
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +2
Query: 596 DWDFLPPKKIKDPEAKKPEDW 658
DWD P+ I DP+AKKPEDW
Sbjct: 918 DWD--KPQNIPDPDAKKPEDW 936
Score = 35.5 bits (78), Expect = 0.061
Identities = 18/49 (36%), Positives = 19/49 (38%)
Frame = +1
Query: 733 PRCPKPXXXXXXXXXXXXXXXIDNPXYKGVWAPKXIDXPX*KAXGSXPK 879
P KP IDNP YKG W PK ID P K P+
Sbjct: 928 PDAKKPEDWDDEIDGEWEPPMIDNPEYKGEWKPKQIDNPNYKGEWVHPE 976
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 796 IDNPXYKGVWAPKXIDXPX*KA 861
IDNP YKG W ID P KA
Sbjct: 963 IDNPNYKGEWVHPEIDNPEYKA 984
>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
Length = 1086
Score = 64.9 bits (151), Expect = 9e-11
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Frame = +2
Query: 494 DDVYTHLYTLIAKPDNTYEVLIDNEKVESGDLEADW--DFLPPKKIKDPEAKKPEDW 658
D THL+TL+ +PDNT+EV ID E V G L D PP +I+DP+ K+PEDW
Sbjct: 87 DGKKTHLFTLVVRPDNTFEVFIDQESVNKGSLLEDMTPPVNPPAEIEDPDDKRPEDW 143
Score = 39.9 bits (89), Expect = 0.003
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +1
Query: 343 CKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIF 444
C L Q+ +TPY IMFGPD CG +K+H IF
Sbjct: 28 CHLFQESFGDKTPYTIMFGPDKCGE-DRKLHFIF 60
Score = 35.1 bits (77), Expect = 0.080
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 560 DNEKVESGDLEA--DWDFLPPKKIKDPEAKKPEDW 658
+ EK+ D E DWD P KI D AKKPE W
Sbjct: 145 EREKIPDPDAEKPDDWDEDAPVKIPDTNAKKPEGW 179
>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 35.1 bits (77), Expect = 0.080
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 320 PPQSMSCSCLTVNWTTKGLPSLLNG 246
P + SC CL V W T GLP L++G
Sbjct: 429 PSEQNSCQCLFVGWQTVGLPQLIHG 453
>SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)
Length = 1223
Score = 33.5 bits (73), Expect = 0.25
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 540 TPMKSSLTMRKLNLAT*RPIGTSFRPRKS-RTLKPRNQKTGMTSPLFQT 683
TP+KSS++ + NL P+ S +P + TL P+ + +T PL +T
Sbjct: 960 TPLKSSVSAKNCNLPKQGPVTVSSKPAIALTTLAPQRTLSSLTGPLIKT 1008
>SB_786| Best HMM Match : EGF (HMM E-Value=0)
Length = 1427
Score = 29.5 bits (63), Expect = 4.0
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +3
Query: 591 RPIGTSFRPRKSRTLKPRNQKTGMTSPLFQTPKTRSLRI 707
RP G F PR T PR + T T+P+F TP +R ++I
Sbjct: 1365 RPAGYYF-PRPQVTQLPRTRGTRPTTPVF-TPSSRRIKI 1401
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 29.1 bits (62), Expect = 5.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 281 WTTKGLPSLLNGLNLRERA*NLASSEVFKP 192
+TT+GLPS ++ +NL E NL S KP
Sbjct: 959 YTTQGLPSKISSVNLTEALSNLISISWSKP 988
>SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 510
Score = 29.1 bits (62), Expect = 5.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 560 DNEKVESGDLEADWDFLPPKKIKDPEAKKPE 652
D++ + GD E + FLPP + E+K PE
Sbjct: 106 DSDNGDKGDSEDEESFLPPSIFDESESKGPE 136
>SB_5367| Best HMM Match : wnt (HMM E-Value=0)
Length = 367
Score = 29.1 bits (62), Expect = 5.3
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = -3
Query: 584 RQIQLSHCQ*GLHRCCRVSQSECTNVCRHHLCS 486
+++Q + C+ H CC+V C H+C+
Sbjct: 335 KEVQATRCRCKFHWCCKVKCKTCIKNVTTHICN 367
>SB_27442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 28.7 bits (61), Expect = 7.0
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +2
Query: 566 EKVESGDLEADWD-FLPPKKIKDPEAKKPEDW 658
EKV +G++ ++D LPP++ K PE+ PE +
Sbjct: 48 EKVWTGEVWREFDPLLPPRRQKGPESLDPETY 79
>SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 28.7 bits (61), Expect = 7.0
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -3
Query: 122 VLTVHPIAFPRIIRKLLLKEYI 57
+LT H + P++IRK+ LK+Y+
Sbjct: 73 LLTAHLVVAPKLIRKMPLKDYV 94
>SB_9471| Best HMM Match : VQ (HMM E-Value=6.2)
Length = 307
Score = 28.7 bits (61), Expect = 7.0
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 503 YTHLYTLIAKPDNTYEVLI-DNEKVESGDLEADWDFLPPKKIKDPEAK 643
+ HLY +A+ YEVL+ D EKV + L+A+ L ++++ E +
Sbjct: 111 WRHLYPAVAETGWRYEVLLNDIEKVSAIALDAEGGLLLSEELQSGEGR 158
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,399,666
Number of Sequences: 59808
Number of extensions: 620454
Number of successful extensions: 1533
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2669453024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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